PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG125500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 353aa MW: 41238.6 Da PI: 9.5523

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG125500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.7	1.8e-13	33	113	1	72
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek 72 k++n+YA+ +GF ++++ + krn+e+++ t++C++ g ++++k+ + e++t++ +t+Ck++++ + k Pavir.4NG125500.1.p 33 KYFNNYAYLAGFAAIIAHHACTqskKRNNEVIRITYKCNRRGVQDTSKEGdtqeeeITAESETNVLVKTNCKCCMEAYNLK 113 69************999766667999************999988776666666777***********865444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	33	122	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.483	157	193	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.3E-5	163	189	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-5	168	195	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MNEFLQATTI SEIDDQYIPR EGMEFSSANE AQKYFNNYAY LAGFAAIIAH HACTQSKKRN 60 NEVIRITYKC NRRGVQDTSK EGDTQEEEIT AESETNVLVK TNCKCCMEAY NLKIFKKFQW 120 QLRRATKLQA TEIEKDKMYE VYMAEDQLVQ EFRSRRYIVI TDLQNEDLSC ICGKFQKDGM 180 LCCHILKVMM KNDIRKIPDK YIIDRWRKKE KKMISKINIR LRVEATALRK EIERLTKELK 240 EMDKYKMKNI DPVFPNVEIA AGNGNITEPS IQLQDPDMAV TKGRPSKLKS NKRTMPKAEE 300 MRKKQKQKYA CKKCDRPGHN TTTCTVEFKM TGTQQDTTED HPTKIKQNKQ RQ*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MNEFLQATTI SEIDDQYIPR EGMEFSSANE AQKYFNNYAY LAGFAAIIAH HACTQSKKRN  60
NEVIRITYKC NRRGVQDTSK EGDTQEEEIT AESETNVLVK TNCKCCMEAY NLKIFKKFQW  120
QLRRATKLQA TEIEKDKMYE VYMAEDQLVQ EFRSRRYIVI TDLQNEDLSC ICGKFQKDGM  180
LCCHILKVMM KNDIRKIPDK YIIDRWRKKE KKMISKINIR LRVEATALRK EIERLTKELK  240
EMDKYKMKNI DPVFPNVEIA AGNGNITEPS IQLQDPDMAV TKGRPSKLKS NKRTMPKAEE  300
MRKKQKQKYA CKKCDRPGHN TTTCTVEFKM TGTQQDTTED HPTKIKQNKQ RQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG125500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3XQ57	3e-88	K3XQ57_SETIT; Uncharacterized protein
STRING	Pavir.J05257.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15026	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	6e-11	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Pavir.4NG125500.1.p