PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG115200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 311aa    MW: 34921.2 Da    PI: 7.1364
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG115200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.24e-13136179447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT+eE+ +++++   +G g+Wk I+r++  ++t+ q+ s+ qky
  Pavir.4NG115200.1.p 136 WTKEEHRKFLKGLDAYGRGSWKNISRHFVPNKTPVQICSHAQKY 179
                          *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.769128184IPR017930Myb domain
SMARTSM007179.4E-10132182IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-15132185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-11135181IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-13135182IPR006447Myb domain, plants
CDDcd001672.27E-9136180No hitNo description
PfamPF002494.0E-10136179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDPRFNGEWS ASEIQTVKSH IARYNTNTYA NNMKKKHTDI MDELQAIFPL KEKHQVTNLY  60
VELMMEMMQS GNQHVVTSNN LMIGNFGMPL EDPSMGNMEL LWDPLKEEME AMSKGIEVPQ  120
REPTPRKEKQ HATRFWTKEE HRKFLKGLDA YGRGSWKNIS RHFVPNKTPV QICSHAQKYF  180
RRLQNANKKQ RYSINDVGLY DTEVGAQNNA SGWEGLTNTG GAYNPNHYGS NDQPAAMNNL  240
AQVTSPLPHI TGQVGSSQTA TLANGPPQQM GASSSSAAPS MEGAVSQMGW IGDQQDDIFA  300
NQWIMNMHMN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122129PTPRKEKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG115200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813224.10.0myb-like protein H
TrEMBLA0A2T7E1D60.0A0A2T7E1D6_9POAL; Uncharacterized protein
STRINGPavir.Db01742.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.12e-20MYB family protein