PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG108900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 456aa    MW: 49721.7 Da    PI: 8.0747
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG108900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.11.5e-2387152171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          rk+ksL+ll++kf++l+ +++ +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w g
  Pavir.4NG108900.1.p  87 RKQKSLGLLCSKFVALYDREDVETIGLDDAAKQL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 152
                          79****************9999************...**..****************************87 PP
2E2F_TDP771.8e-24232312171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          rkeksL+lltq+f+kl+ + e ++ +l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Pavir.4NG108900.1.p 232 RKEKSLGLLTQNFVKLFLTMEVETFSLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqadTRKPAFRWLG 312
                          79******************************************************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-2683153IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.78E-1686151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-2987152IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-2188152IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.3E-23229313IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-32232312IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.8E-20233312IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-12234312IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDAPAAAAAG PSSSSEAAAA GPSSAAAPAA AARPSSGAEP PAAAAQPPPP VAPRVQLLQA  60
PVLGGGGAGS GGGSGVARTC RHHAYSRKQK SLGLLCSKFV ALYDREDVET IGLDDAAKQL  120
GVERRRIYDI VNVLESVGIL VRRAKNRYTW LGFGGVPAAL KELKERALRE MSGSSVLPPM  180
EESSAANLSD DEDDEKLEDA DEDAESEKLS QSVDNTSDKP DAPGCRLRSD HRKEKSLGLL  240
TQNFVKLFLT MEVETFSLDE AARLLLGEGH AESNMRTKVR RLYDIANVLS SLNLIEKTQQ  300
ADTRKPAFRW LGQAKRKQEN NTMVALPTAR PNKRAFGTDL TNFDNKRGRL DSTTENKVKL  360
MQGSGNIVKT FERQLGQGNR NDFVYGPFHP SVAKKQESDD HTTVRQKERK TIQDWENLAV  420
TFRPQYQNQA LNDLFGHYVE AWKSWYLDLT RETSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-39863043228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.285230.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG108900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280270.0KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966858.10.0E2F transcription factor-like E2FE
TrEMBLA0A3L6S1F20.0A0A3L6S1F2_PANMI; E2F transcription factor-like E2FE
STRINGPavir.Db01700.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-103DP-E2F-like 1