PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG100700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 288aa MW: 32579.2 Da PI: 8.1248

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG100700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.7	9.8e-28	157	207	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++e +s+yF++pi +AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl Pavir.4NG100700.1.p 157 ETALTFELVSQYFYMPIMQAARELNVGLTLLKKRCRELGIPRWPHRKMKSL 207 6789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.156	144	227	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-22	160	207	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MCPMISGFMG RISLPSSPYN CWPASNSSIS HSPGRMEANH EESCLLPYWT SAWAGSNLLE 60 EEALLSSLSF PSLHFQPSYS TITPSNILQA DELDAIFKDD VLKHWDEMER ADSKAEDGGH 120 KRLPLLCYGD EKDVFSGSNS GATKVAGADQ RARPPEETAL TFELVSQYFY MPIMQAAREL 180 NVGLTLLKKR CRELGIPRWP HRKMKSLQSL INNVQVLQEA GKATGEEQLR AVVEMLQQEK 240 QLLEQRPYVQ LEKKTKRLRR ACFKANYKKR RLLALEGEEA TRTTHKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG100700.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966836.1	1e-136	protein RKD2
TrEMBL	A0A3L6RY28	1e-147	A0A3L6RY28_PANMI; Protein RKD2
STRING	Pavir.J13146.1.p	1e-176	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-38	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.4NG100700.1.p