PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG095300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 24482.3 Da PI: 5.6611 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 36 | 80 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+v+++k+lG++ W++Ia++++ gRt++++k++w++ Pavir.4NG095300.1.p 36 RGNISDDEEDLIVRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWNST 80 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 16 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-19 | 16 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.077 | 17 | 30 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 24.769 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-15 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 36 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-12 | 40 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-20 | 43 | 81 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MELVFVHACV MHAGLRRCGK SCRLRWLNYL RPNIKRGNIS DDEEDLIVRL HKLLGNRWSL 60 IAARLPGRTD NEIKNYWNST LGRRVGAGGS RAVVAGKPDA PAASGAGSCE TGQKGAAAAP 120 RAGPDSAGSA AAETAVRAPK AVRCRAGSLL FFHSDQDTPP AGETPTTGGG AGGPGEGPDD 180 CSSSAASTFA AGVDEQPCFS GSGDWMDDVR VLESFLENDD EWVMCQVTDE HLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 17 | 85 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG095300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY135019 | 4e-94 | AY135019.1 Zea mays PL transcription factor (pl) mRNA, pl-W22 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812125.1 | 8e-95 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 3e-60 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A3L6PH97 | 7e-95 | A0A3L6PH97_PANMI; C1-B73 | ||||
STRING | Pavir.Db02046.1.p | 2e-80 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 6e-38 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG095300.1.p |