PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG077300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 802aa    MW: 92955.4 Da    PI: 6.2748
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG077300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.91.2e-16202281289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          f + Y++ +GF v k +++k+      +k tfvC+k+ k++e++++ +++rr+ a ++t+C+ k++vk+   ++wevt   +eHnH+l
  Pavir.4NG077300.1.p 202 FISVYGQVTGFAVIKGTNYKH------KKITFVCNKSRKARENDTR-QRKRRRDAIEHTQCRMKMTVKLV-ADRWEVTAAMNEHNHPL 281
                          6678***************99......5678***********9999.99*********************.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-14202281IPR004330FAR1 DNA binding domain
PfamPF105514.0E-28406498IPR018289MULE transposase domain
PROSITE profilePS509669.644686722IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-4697724IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MERGAESSPM LPAQTMTERN LKSYQEMSGA NRESGMGQGN ESANGESYGL VASPMNKVRE  60
ARKEADLTIV EMENTSRGDT DLEERYGIML APEHEVREHG NLTTQESLQS PIFLWNDTEI  120
NRQSEIQVPG AGETFVQELG QENGNVILNE GDEDLNECQK DQAEAEADGD EDYMFPSPEE  180
MEKARPPEVG MIFSTLQDAH RFISVYGQVT GFAVIKGTNY KHKKITFVCN KSRKARENDT  240
RQRKRRRDAI EHTQCRMKMT VKLVADRWEV TAAMNEHNHP LWCSPLLTRF FMSHKDMSDE  300
ERHFSRILQE SRIKPAMIME IFRKLQGRFK NVPVRKVDVN NLKQSDRLMK TRNTDIGCTL  360
EHVRRLQKEQ PGFYYTMKTD EDCTIRSIFW TDARARLGYA LYGDFIHFNT TYRTNAYHMP  420
FASLIGINGH GKPTVFGWAL LENGEAETFS WLFRTFLDVM DGKKPSIIIT HQDSAIQKSI  480
AEVFPTVFHR FSMWHVVKEA AAEVGGFMVN RPGMEAELTR LITNSLTTEA FENGWKGMLQ  540
KYTAELNEHL KHMYWTRSMW VPVYFKHVFF PFIRSFGHCE STHSIFKDCV LQEDTIETFI  600
SQYNIFQEEA VSIDRFESTL QKPIYCTRQL IERRAAEIYT MGLFSKFQKE LLDASAFNVF  660
ENEKDRIYTV QRVVDYEDAE FPNDSFTIEV DMKNKTFNCI CSKFERDGIL CCHVLRLFTQ  720
FGINEIPEHY IKQRWTKNRE QELQKLCIEK TGSTASQNSL RYAMLMNRMA ETCASVSKDP  780
NKSQIFLEEL ERIQQKMSSM A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242246RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG077300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975158.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A2T7CSB80.0A0A2T7CSB8_9POAL; Uncharacterized protein
STRINGPavir.J06737.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-81FAR1-related sequence 5