PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG069200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 1055aa MW: 116484 Da PI: 6.5694 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 3.9e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Pavir.4NG069200.1.p 127 FCKTLTASDTSSHGGFSVPRRAAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI 214 99*****************************96555444..8************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Pavir.4NG069200.1.p 215 --RDEKSQLLLGIRRA 228 ..4567778***9997 PP | |||||||
2 | Auxin_resp | 122.9 | 2.3e-40 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldp+rW+nS+Wr+L+ Pavir.4NG069200.1.p 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPIRWKNSHWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-43 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-41 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-20 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.308 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-35 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.4E-9 | 936 | 1025 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.747 | 939 | 1032 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.08E-8 | 955 | 1018 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1055 aa Download sequence Send to blast |
MKDQGSGGVT PSPAEGDKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK 60 ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN 120 KQPAEFFCKT LTASDTSSHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR 180 HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITGIGD LDPIRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQNA LFPGLSLVQW 420 MAMQQNPQML TAGAPSVQSQ YLTSNALGMQ DGIGNVNEDP AKRLSMQAQN IGLPNLQAGT 480 KVDHPALTSL AQQQQQPHHV LQQQQVQPLQ QSSTILQQQQ AQLLQQNAIH LQQQQEQLQR 540 QQSQPPQQLK APASLQPMDQ HKLKEQQPPG GQAVSQAQLL NQILQPSSSQ LQQLGLPKSP 600 TQRPGLPGLT TMGSLPQPQL TQSPQLQQTA EYQQALLQSQ QPQLQQLSQS ELQLQLLQKI 660 QQQNLLSQLN SQHQSQLIQQ LSQKSQEILQ QQVLQHQLGG ADAMGQLKHL QQTPLNHMTG 720 SMTPQQLVRS HSALVESEEP SSSTAPSGSR VSPINSLSRA QQGSRNLPEI PSTPHIEHLL 780 QEIQSKSDNR IKNDIQGSKE TVHAPSRHPA SDQLDASSTT SFCLDESPRE GFSFPPVCLD 840 SNAQVDPRDN FLIAENVDTL MPDALLSRGM SSGKGICNLP SGQRDHRDVE NELSSAAFSS 900 QSFGVPDMSF KPGCSSDVAV ADGGMASQGL WNSQTQRMRT FTKVQKRGSV GRSIDITRYR 960 GYEDLRHDLA CMFGIQGQLE DPYRTDWKLV YVDHENDILL VGDDPWEEFV SCVKSIKILS 1020 SAEVQQMSLD GDLGCIPPQA QACSASDDAN AWRA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-165 | 16 | 356 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.30069 | 0.0 | callus| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG069200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727741 | 0.0 | KJ727741.1 Zea mays clone pUT5682 ARF transcription factor (ARF27) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812098.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | A0A3L6S1E9 | 0.0 | A0A3L6S1E9_PANMI; Auxin response factor | ||||
STRING | Si005753m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG069200.1.p |
Publications ? help Back to Top | |||
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