PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG067300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 473aa    MW: 51093.3 Da    PI: 5.9692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG067300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12322367555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Pavir.4NG067300.1.p 322 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 367
                          99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17315377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-13315371No hitNo description
PROSITE profilePS5088817.212317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17319376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDYSSGSYFS PWPINSASER YSLADGSVES FGEGSMPPSS YFMTASSDHS LKFSGHEQDS  60
TMLTNERLTY AGAGHADLLP GDILSRDKFP ENLLELQRLQ NNGNLQSNLV NPQVLQCTST  120
PRRFHQQLPH ALSSSIDSNS CEVSAFLADV NAVSSASTLC PTFQNHPSFM EPVNIEAFDF  180
QGAQSDAILN KTSHPNGNIS VFDNAALASL HDSKEFISSR LPSFPSVQET NLAAIGFKTQ  240
KQEQNPMCNL PIPAFTAHNQ MAVTTTKGAR IPQQMPSLVN ENKSDCPVSR PSDVQNQANS  300
AGNGVGMKPR ARARRGQATD PHSIAERLRR EKISDRMKNL QDLVPNSNKA DKASMLDEII  360
DYVKFLQLQV KVLSMSRLGS AGAVLPLLTE SQTKGCHGQP LSASTKAQGL LDAQDSEDAL  420
AFEEEVVKLM ETSITSAMQY LQNKGLCLMP VALASTISAQ KGVSAAAIPP ER*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.77680.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG067300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812392.10.0transcription factor bHLH110-like
TrEMBLA0A2S3HL110.0A0A2S3HL11_9POAL; Uncharacterized protein
STRINGPavir.Db01966.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-57LJRHL1-like 3