PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG063700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 567aa    MW: 65139.1 Da    PI: 8.8394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG063700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07357398347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE e+  + v++ G+  Wk  a ++g  +++ ++k+ w+  
  Pavir.4NG063700.1.p 357 KWTQEEYEIVRRFVERNGTS-WKELATELG--KSEIHVKDTWRRM 398
                          8*****************99.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.2E-4281352IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-7283345IPR009057Homeodomain-like
PROSITE profilePS500905.413284350IPR017877Myb-like domain
SuperFamilySSF466899.23E-8330411IPR009057Homeodomain-like
PROSITE profilePS512949.264352403IPR017930Myb domain
SMARTSM007170.029354401IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-8357409IPR009057Homeodomain-like
PfamPF139212.0E-9358416No hitNo description
PROSITE profilePS500908.223400468IPR017877Myb-like domain
SMARTSM007170.0024404470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-8410472IPR009057Homeodomain-like
SuperFamilySSF466891.87E-8448526IPR009057Homeodomain-like
PROSITE profilePS500907.561470523IPR017877Myb-like domain
SMARTSM0071715474525IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MERGSAAEYS EVKSVVGSNE EKKAQKSKID KGQRKRKKDK AKGHGGDGDR LIQSDDKNHS  60
VDLEHAEVSA KMAEKPSLEN TEVIMSKRDL KKDWKKKKKN KEFDTISQKQ IIDANDGTVG  120
SEQLEMNEGE GEHDSKLKKG KRKHRDGETS SNGSSHDQIV PVGDKKRKRK EPSITLEESN  180
EVDTSKIWQT TEGKKKRRKE RDNIGVDLSL NTPAGDGKNY NKEKKTSKDD NDGSKSGKVN  240
FAHRKDKDRR VRFTDNVEVF NIDGGDDHEE GDGSGDSGLV HGKRFTPEED AKLMEAIEKY  300
AEMKQLGDKG LEMIRASMQH PEIRGCWAEI ATSLPHRPQM AVYKRARILL YRSAERKWTQ  360
EEYEIVRRFV ERNGTSWKEL ATELGKSEIH VKDTWRRMKP TNLKKGAWTQ DEYQNLFDLV  420
NLDLRVKAHQ KITPSHRQLR DNISWEAISE KLTTRSNKDC CLKWYQQLAS HLVKEGIWAD  480
TDDYLLMEAL QKVDAVCVED VDWERLLDHR SGELCRQRWN QMVRMIGGHR EKPFIEQVEV  540
LARRYCPEML DYRKAESSDT LTGGTD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935DKGQRKR
23337RKRKK
33338RKRKKD
43339RKRKKDK
5164169KKRKRK
6193197KKKRR
7193198KKKRRK
8194198KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19790.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG063700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811599.10.0RNA polymerase I termination factor-like isoform X2
RefseqXP_025811600.10.0RNA polymerase I termination factor-like isoform X2
TrEMBLA0A2S3HM590.0A0A2S3HM59_9POAL; Uncharacterized protein
STRINGPavir.Db02194.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-94MYB_related family protein