PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG062800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 432aa MW: 47421.5 Da PI: 7.0245

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG062800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.1	8.6e-33	53	212	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L++kv+ + ++++ + i+ +i++++P++Lp ++++ + +fF++ +k+y+tg+rk+r+ Pavir.4NG062800.2.p 53 LPAGVKFDPTDQELI-EHLQAKVRPGStaapshplIDEFIHtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqp 140 799**********.99*9988777776653333334777656******.455566799**************88 PP NAM 78 ....................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Pavir.4NG062800.2.p 141 paadassssapaaqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPEKTNWVMHQYHL 212 ************99998755789********.9999******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-36	47	231	IPR003441	NAC domain
PROSITE profile	PS51005	29.661	53	231	IPR003441	NAC domain
Pfam	PF02365	2.2E-15	54	212	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MDGAAAAGAG SGGSGGHRLI GLRIEEYGKY ISDSTCCPQC GHKIDRKLDW VGLPAGVKFD 60 PTDQELIEHL QAKVRPGSTA APSHPLIDEF IHTIEGEDGI CYTHPEKLPG LTKDGLSRHF 120 FHRPSKAYTT GTRKRRKIQP PAADASSSSA PAAQQQQQQQ RSETRWHKTG KTRPVVVAGR 180 QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGENEEERE GELVVSKIFY QTQPRQCGAA 240 AEPAAPASSD TVDGAADPAA DAVVAPPDVS DGGVFHGATG IDEFNFAQFR SSFEEVDVGT 300 SVQVPASRAD EEVHTGHLHL HQEHNLHQHR YPNQEQQRMA AAAAAFQIST PAEPITTMIS 360 SSPMVHHGSV ILQHQEPYDH SASYRHHQQE DEQPHQSRNF DGRSTSGLEE VIMGCTSRRS 420 RRGVSIVQNL Y*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MDGAAAAGAG SGGSGGHRLI GLRIEEYGKY ISDSTCCPQC GHKIDRKLDW VGLPAGVKFD  60
PTDQELIEHL QAKVRPGSTA APSHPLIDEF IHTIEGEDGI CYTHPEKLPG LTKDGLSRHF  120
FHRPSKAYTT GTRKRRKIQP PAADASSSSA PAAQQQQQQQ RSETRWHKTG KTRPVVVAGR  180
QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGENEEERE GELVVSKIFY QTQPRQCGAA  240
AEPAAPASSD TVDGAADPAA DAVVAPPDVS DGGVFHGATG IDEFNFAQFR SSFEEVDVGT  300
SVQVPASRAD EEVHTGHLHL HQEHNLHQHR YPNQEQQRMA AAAAAFQIST PAEPITTMIS  360
SSPMVHHGSV ILQHQEPYDH SASYRHHQQE DEQPHQSRNF DGRSTSGLEE VIMGCTSRRS  420
RRGVSIVQNL Y*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG062800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969775	0.0	EU969775.1 Zea mays clone 335447 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812519.1	0.0	NAC domain-containing protein 75-like
Swissprot	Q9M0F8	1e-106	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2T7DXI6	0.0	A0A2T7DXI6_9POAL; Uncharacterized protein
TrEMBL	A0A3L6S0J9	0.0	A0A3L6S0J9_PANMI; NAC domain-containing protein 43-like isoform X2
STRING	Pavir.Db01277.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	8e-97	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Pavir.4NG062800.2.p

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]