PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG060800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 315aa    MW: 34272.3 Da    PI: 6.517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG060800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16109155455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Pavir.4NG060800.1.p 109 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 155
                          6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-20102165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-20102165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-17108159No hitNo description
PfamPF000109.0E-14109155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-18111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDEQGFGGFG GGRGAVRGQG REAMALLQHQ HHHQRRRQLE VEEEEEEEAR RQMFAGVAAF  60
PAAALGLGHE ADYGEEAGGL GDSDAGGSEP EPARQRGGSG SKRSRAAEVH NLSEKRRRSK  120
INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMRNGVYLN PPYLSGALEP  180
AQASQMFAAL GGGNITVSST GAVMSPVNQS SGTHQAFDPL NPPQNQPLSF LLPSVPDKTI  240
PERQFHLEPS QSHLQTFRMP ESSEMMLRGE IMAKHQLTSA QERVGLPGND MKPVRQESSI  300
VHADHFDGCS RSKE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG060800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811540.11e-169uncharacterized protein LOC112889235 isoform X1
TrEMBLA0A2T7E2L41e-169A0A2T7E2L4_9POAL; Uncharacterized protein
STRINGPavir.J38250.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-35bHLH family protein