PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG050800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 614aa    MW: 63786.5 Da    PI: 7.8356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG050800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30261320159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Pavir.4NG050800.1.p 261 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 320
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-32246320IPR003657WRKY domain
SuperFamilySSF1182902.22E-27254321IPR003657WRKY domain
PROSITE profilePS5081128.311256322IPR003657WRKY domain
SMARTSM007743.4E-37261321IPR003657WRKY domain
PfamPF031062.9E-27262320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MTKGVKQLGS HEERLTDKAK DDDHIPDGNL FKSLHKSSSG TKVCSPNPLE RSQIDEESNQ  60
TSANLKAHNK VEEDKLASTR AEMGEVREEN KRLKTMLSRI VEDYRSLQLH FHDVLQQGQA  120
KKLAYPATVA PTDVEEPEFV SLSLGTSTST RKKEETSSVS EGKGREDSMN TNKGGLSLGL  180
SDCKVGATNN AKIQPDVLTP EGSSEDAKDD AMEAADQQWP PSKTLKNLRG VGAEAEDDIG  240
PLQQAKKTRV SVRARCDAPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA AGCPVRKQVQ  300
RCADDMSILI TTYEGTHNHP LSASATAMAS TTSAAASMLT SGSSTSLRFP AAAGLGFGFP  360
AAHDGAASSK HFFLPNGGAA SITSTPSYPT ITLDLTSPAA ASQAFSLSSR FPSSSFGHGG  420
SRYPPTSFSF STSGPSALSG AAWPAAGGAG YLSYGSPAPS LFTGGKHSIN GRQQGGEAPV  480
LHHQLQKASA SGSSTAGVLT DTIAKAITSD PGFHTALAAA ITSYVGTQGG KSSSAEGDGG  540
SQLQGLKWGQ HLGLGPSPSS AGAACSSAVL ARSSPTTEAA EQGSNGHRSF LQPSLGVSGS  600
HSASTSPVEN REH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-202613231778Probable WRKY transcription factor 4
2lex_A3e-202613231778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG050800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811456.10.0probable WRKY transcription factor 72
TrEMBLA0A2S3HLX20.0A0A2S3HLX2_9POAL; Uncharacterized protein
STRINGPavir.Db02233.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-58WRKY DNA-binding protein 72