PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG050400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 438aa    MW: 46690.7 Da    PI: 6.7029
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG050400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-1480139155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  Pavir.4NG050400.1.p  80 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYHEEDAAARAYDLAALKYWG 139
                          789******************888855566447**********99*************98 PP
2AP243.77.1e-14170216655
                  AP2   6 VrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +r+++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Pavir.4NG050400.1.p 170 IRRHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 216
                          89***********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-1580148IPR016177DNA-binding domain
PfamPF008477.1E-1180139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1481148IPR001471AP2/ERF domain
PROSITE profilePS5103219.15181147IPR001471AP2/ERF domain
SMARTSM003803.4E-2381153IPR001471AP2/ERF domain
PRINTSPR003673.4E-58293IPR001471AP2/ERF domain
PROSITE profilePS5103216.621165224IPR001471AP2/ERF domain
SMARTSM003803.6E-22169230IPR001471AP2/ERF domain
PfamPF008471.3E-9170216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-15172225IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-15172226IPR016177DNA-binding domain
CDDcd000182.27E-20172226No hitNo description
PRINTSPR003673.4E-5206226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
METYSLVKDE LHGRVGGGGQ GLYCGATPRA APVAAGGGGA VKSVKRRKRE PSSVVTASNG  60
KEEAGGDKSA AGSNAAKRSS RFRGVSRHRW TGRFEAHLWD KGTWNPTQKK KGKQVYLGAY  120
HEEDAAARAY DLAALKYWGP STYTNFPVAD YEKELKVMQN VSKEEYLASI RRHHHNGRWE  180
ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIEYRGINAV TNFDLSTYIR WLKPAAGDDG  240
GTPTSGACRQ SMPPPPLCLQ AGGLLQHPHG AAAGMLQVDV DSLYRGHHHL AAAAAQRGAS  300
FSGLDDVGSV FAGGPSPTAA AACGRLSPSS STTALSLLLR SSVFQELVAR NAGAAAQQQQ  360
QQQPVPADDD DGAAASDVVD AKVEIEESLG RPDAEGELGH DMYGGAAGAE EEEAFACSMY  420
DLDDSFTRIE QSFWNCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147KSVKRRK
2105113PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG050400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034879e-72AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037679e-72AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149629e-72AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813277.10.0ethylene-responsive transcription factor WRI1-like
TrEMBLA0A3L6RZH50.0A0A3L6RZH5_PANMI; Uncharacterized protein
STRINGPavir.J19507.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-68AP2 family protein