PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG030200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 458aa MW: 49143.7 Da PI: 9.7386

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG030200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.8	2.1e-24	203	247	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Pavir.4NG030200.1.p 203 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 247 79****************************************986 PP
2	QLQ	61.4	2.5e-21	129	163	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++++ Pavir.4NG030200.1.p 129 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPVR 163 5********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.5E-11	128	164	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.07	129	164	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-15	130	163	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.346	203	247	IPR014977	WRC domain
Pfam	PF08879	5.8E-21	204	246	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MEVVQWEGVG KEKRCEYPRL PREGQQGGRA GPGPGPGPRG STRRQATRQA ASQRVRLEAG 60 AIASKANPSG LPPSYLQIPP PTPKGRVGVE PTGGGQAIDA ELGILGGGGD WGGGRGGGGY 120 PPPQRGAAVF TAAQWAELEQ QALIYKYLMA GVPVPPDLLL PVRPSPHSAA AFSFTNPGAA 180 ASPFYHHHHP SLSYYAYYGK KLDPEPWRCR RTDGKKWRCS KEAHPDSKYC ERHMHRGRNR 240 SRKPVESKTA SPAHPSQPQL STVTTTTRER APLDSLTVGG KTHGLSLGGA GSSQLHVDAS 300 NAHYRYGSKY PLGAKADAGE LSFFSGASGN SRGFTIDSPT ENSWNSLPSN VPPFTLSKSR 360 DSGLLPGTYS YSQLEPPQEL GQVTIASLSQ EQERHSFSSG AGGLLGNVKQ ENQPLRPFFD 420 EWPGTRDSWS EMDDARPNRT SFSTTQLSIS IPMPRCD*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MEVVQWEGVG KEKRCEYPRL PREGQQGGRA GPGPGPGPRG STRRQATRQA ASQRVRLEAG  60
AIASKANPSG LPPSYLQIPP PTPKGRVGVE PTGGGQAIDA ELGILGGGGD WGGGRGGGGY  120
PPPQRGAAVF TAAQWAELEQ QALIYKYLMA GVPVPPDLLL PVRPSPHSAA AFSFTNPGAA  180
ASPFYHHHHP SLSYYAYYGK KLDPEPWRCR RTDGKKWRCS KEAHPDSKYC ERHMHRGRNR  240
SRKPVESKTA SPAHPSQPQL STVTTTTRER APLDSLTVGG KTHGLSLGGA GSSQLHVDAS  300
NAHYRYGSKY PLGAKADAGE LSFFSGASGN SRGFTIDSPT ENSWNSLPSN VPPFTLSKSR  360
DSGLLPGTYS YSQLEPPQEL GQVTIASLSQ EQERHSFSSG AGGLLGNVKQ ENQPLRPFFD  420
EWPGTRDSWS EMDDARPNRT SFSTTQLSIS IPMPRCD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	GGRGGGG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.8974	0.0	callus\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG030200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811710.1	0.0	growth-regulating factor 5-like isoform X2
Swissprot	Q6AWY4	0.0	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A2T7E3Q9	0.0	A0A2T7E3Q9_9POAL; Uncharacterized protein
TrEMBL	A0A2T8JF37	0.0	A0A2T8JF37_9POAL; Uncharacterized protein
STRING	Pavir.Da02366.1.p	0.0	(Panicum virgatum)
STRING	Pavir.Db02421.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11046	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-22	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Pavir.4NG030200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]