PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG022400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 331aa MW: 36773.6 Da PI: 10.0906 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 386.3 | 4.7e-118 | 1 | 330 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye....pa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 md+ g+re r+++ +++ + ++lk++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l Pavir.4NG022400.1.p 1 MDNLGHREngRQRPdQFKavhtQWmlPQLKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDNAL 90 9999999999***999998876225689************************************************************** PP GAGA_bind 82 lalllvensla...salpvg...vqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkp 159 +al+l++++ + +++ v l+gtk+i++++qls+ ql+ds+++ +re++++ea+pi a+ ++ + kk++k++++++p Pavir.4NG022400.1.p 91 AALELARTNGFnmnNGNGFHqhqVPPLNGTKNIHHHDQLSHvqsspMQLADSPYDhAREMHISEAYPIAAAPGSIGKGKKPRKNNTQASP 180 ***99888765555444443000445789*********999999999********9********************************** PP GAGA_bind 160 kekkak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241 +++ + +k+kk ++++k+ +++ e+ +k+e+k++dl+ln+v +Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCt+++S+ Pavir.4NG022400.1.p 181 LKRPSGvlRKTKKAASEWKNRGMSGGGEDstrasvMKNEWKDQDLGLNQVPFDESTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSMSM 270 ***999776667777888888777655334678889****************************************************** PP GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 yPLPv+++rr+aR++grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir Pavir.4NG022400.1.p 271 YPLPVMPNRRHARMGGRKMSGSAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 330 ***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.9E-164 | 1 | 330 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.6E-95 | 1 | 330 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDNLGHRENG RQRPDQFKAV HTQWMLPQLK DHHSMNLLAL MNEKDSAIRE RDHALAEKKA 60 AIAERDMAFA QRDAAMAERN AAIVERDNAL AALELARTNG FNMNNGNGFH QHQVPPLNGT 120 KNIHHHDQLS HVQSSPMQLA DSPYDHAREM HISEAYPIAA APGSIGKGKK PRKNNTQASP 180 LKRPSGVLRK TKKAASEWKN RGMSGGGEDS TRASVMKNEW KDQDLGLNQV PFDESTMPAP 240 ACSCTGELRQ CYKWGNGGWQ SSCCTMSMSM YPLPVMPNRR HARMGGRKMS GSAFTKLLSR 300 LAAEGHDLST PVDLKDHWAK HGTNRYITIR * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17136 | 0.0 | leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG022400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184759 | 0.0 | KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811522.1 | 0.0 | barley B recombinant-like protein D | ||||
Refseq | XP_025811523.1 | 0.0 | barley B recombinant-like protein D | ||||
Refseq | XP_025811524.1 | 0.0 | barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 0.0 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A2S3HME4 | 0.0 | A0A2S3HME4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db02349.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-102 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG022400.1.p |
Publications ? help Back to Top | |||
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