PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG016400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BBR-BPC

Protein Properties

Length: 331aa MW: 36770.5 Da PI: 9.9924

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG016400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	384.6	1.6e-117	1	330	1	301
GAGA_bind 1 mdddgsre..rnkg.yye......paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 md+ g+re r+++ +++ ++lk++ +++l+++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l Pavir.4NG016400.1.p 1 MDNLGHREngRQRPdQFKavhtqwMMPQLKDHHSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDNAL 90 9999999999*999998886543389********************************************************** PP GAGA_bind 82 lalllvensla...salpvgvqv...lsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkp 159 +al+l++++ + +++ ++ l+gtk+i++++qls+ ql+ds+++ +re++++ea+pi +a+ + + kk++k++++++p Pavir.4NG016400.1.p 91 AALELARTNGFntnNGNGFHQHQgppLHGTKNIHHHDQLSHvqsspLQLADSPYDhAREMHISEAYPIATAPGCIGKGKKPRKNNTQASP 180 99888766555233332222223789******999899999****9****************************** PP GAGA_bind 160 kekkak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241 +++ + +k+kk ++++k+ +++ e+ +k+e+k++dl+ln+v +Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCt+++S+ Pavir.4NG016400.1.p 181 LKRPSGvlRKTKKAASEWKNRGMSGGGEDstrasvMKNEWKDQDLGLNQVPFDESTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSMSM 270 999776667777888888777655334678889*************************************************** PP GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 yPLPv+++rr+aR++grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir Pavir.4NG016400.1.p 271 YPLPVMPNRRHARMGGRKMSGSAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 330 *********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.7E-167	1	330	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.3E-95	1	330	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDNLGHRENG RQRPDQFKAV HTQWMMPQLK DHHSMNLLAL MNEKDSAIRE RDHALAEKKA 60 AIAERDMAFA QRDAAMAERN AAIVERDNAL AALELARTNG FNTNNGNGFH QHQGPPLHGT 120 KNIHHHDQLS HVQSSPLQLA DSPYDHAREM HISEAYPIAT APGCIGKGKK PRKNNTQASP 180 LKRPSGVLRK TKKAASEWKN RGMSGGGEDS TRASVMKNEW KDQDLGLNQV PFDESTMPAP 240 ACSCTGELRQ CYKWGNGGWQ SSCCTMSMSM YPLPVMPNRR HARMGGRKMS GSAFTKLLSR 300 LAAEGHDLST PVDLKDHWAK HGTNRYITIR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17136	0.0	leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG016400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184759	0.0	KF184759.1 Saccharum hybrid cultivar R570 clone BAC 015H09 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811522.1	0.0	barley B recombinant-like protein D
Refseq	XP_025811523.1	0.0	barley B recombinant-like protein D
Refseq	XP_025811524.1	0.0	barley B recombinant-like protein D
Swissprot	Q5VSA8	0.0	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A3L6PFL1	0.0	A0A3L6PFL1_PANMI; Barley B recombinant-like protein D
STRING	Pavir.J00934.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-101	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Pavir.4NG016400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]