PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG007200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TALE | ||||||||
Protein Properties | Length: 434aa MW: 47853 Da PI: 8.17 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.1 | 1.1e-06 | 324 | 362 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HH.HHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLter.qVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ + qV++WF N R + Pavir.4NG007200.3.p 324 FEHflHPYPNDVDKHILARQTGLSRSqQVSNWFINARVR 362 554459*****************97528*********88 PP | |||||||
2 | BELL | 97.2 | 1.4e-31 | 184 | 252 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 el+++k++Lls++eeVd+rY+ y+eq+++v Feavag g++++Yt+lAl+a+SrhFrcL+da++ q+ Pavir.4NG007200.3.p 184 ELERRKSRLLSMVEEVDRRYRVYREQMRAVEVWFEAVAGAGASQVYTRLALRAMSRHFRCLRDALVAQV 252 899***************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-50 | 116 | 250 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-41 | 122 | 248 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 9.297 | 302 | 366 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.04E-9 | 305 | 367 | No hit | No description |
SMART | SM00389 | 1.7E-5 | 305 | 370 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-14 | 306 | 373 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 308 | 372 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.9E-16 | 322 | 362 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MAVHHHPHLL DLSPPPSTVA MEAPPPSFDH GQLLALHVDG TDDMLSLGGL PATDHHVLAD 60 DTSAWPQGAI SLSLYNYDGT AGGSSSLLMS HQDQLAAVPP AAVSLQAPNN HLPPPSMQPF 120 QLRSSKYLGP AQDLLTEFCS LQGDSHAMNG VNKRAPGKWE DMEPSSSSSG LWGHPSLSSM 180 DLLELERRKS RLLSMVEEVD RRYRVYREQM RAVEVWFEAV AGAGASQVYT RLALRAMSRH 240 FRCLRDALVA QVRALMRKQQ NDYGGPPAPA AGATKGDTPR LKVLDQCLRR QRAFQHPGSI 300 DNYPWRPQRG LPERAVAVLR AWLFEHFLHP YPNDVDKHIL ARQTGLSRSQ QVSNWFINAR 360 VRLWKPMIED MYRDEVQQQQ QSEAATTQNN PTSAGADAAA AGGVAVKAEQ NATMIPASST 420 VTYGWRRRPS VHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-13 | 311 | 373 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 1e-13 | 311 | 373 | 5 | 66 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG007200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039909 | 1e-178 | BT039909.1 Zea mays full-length cDNA clone ZM_BFc0050K05 mRNA, complete cds. | |||
GenBank | KJ728286 | 1e-178 | KJ728286.1 Zea mays clone pUT6565 HB transcription factor (HB38) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813822.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 3e-87 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A2T7E3W0 | 0.0 | A0A2T7E3W0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db02458.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 3e-65 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG007200.3.p |
Publications ? help Back to Top | |||
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