PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG000100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 205aa MW: 21873.5 Da PI: 5.694 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 161.4 | 7.8e-50 | 1 | 182 | 193 | 374 |
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281 +L+vk+gE++aVn+vl+ hrll++++ + ++L l +s+ + ++ + e+e +ns+++ +rf++al+yy+a fd++ +a+l+ +s + Pavir.4NG000100.1.p 1 MLHVKRGECVAVNCVLAAHRLLRDDTGAAL--ADFLGLARSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVgAAGLSDASPA 88 79********************87777666..89*********************************************99********* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvs 369 r+k E++ ++rei+n+va e a+r+erhe+++ Wr+r+ee GF+++ l++++a+qa+++ r+++ y+v+ + + l+l W d+p+++ Pavir.4NG000100.1.p 89 RVKAEEM-FAREIRNAVAFEDADRFERHESFAGWRRRMEEGGFQNAGLGDREAMQARMIARMFAPGNYSVQAQgdGEGLTLRWLDQPMYT 177 *******.********************************************************555*999554367788********** PP GRAS 370 vSaWr 374 vSaW+ Pavir.4NG000100.1.p 178 VSAWT 182 ****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.6E-47 | 1 | 182 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 21.569 | 1 | 160 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MLHVKRGECV AVNCVLAAHR LLRDDTGAAL ADFLGLARST GAAILLLGEH EDALNSGRWE 60 ARFARALRYY AAAFDAVGAA GLSDASPARV KAEEMFAREI RNAVAFEDAD RFERHESFAG 120 WRRRMEEGGF QNAGLGDREA MQARMIARMF APGNYSVQAQ GDGEGLTLRW LDQPMYTVSA 180 WTPVGDGGGG GSTVSASVST TGQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-19 | 4 | 181 | 197 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18018 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG000100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069876 | 0.0 | BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812393.1 | 1e-115 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 2e-90 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A3L6PBC2 | 1e-135 | A0A3L6PBC2_PANMI; Scarecrow-like protein 28 | ||||
STRING | Pavir.J20271.1.p | 1e-145 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 2e-41 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG000100.1.p |
Publications ? help Back to Top | |||
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