PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG379700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 227aa    MW: 24679.8 Da    PI: 9.6219
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG379700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1892146256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++++L+ rqV vWFqNrRa+ k
  Pavir.4KG379700.1.p  92 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELAHQVNLSARQVEVWFQNRRARTK 146
                          788899***********************************************98 PP
2HD-ZIP_I/II113.31.5e-3692180189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          +kk+rl+keq++lLE++F++++ L++ +K+ela++++l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL++e  +L++
  Pavir.4KG379700.1.p  92 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELAHQVNLSARQVEVWFQNRRARTKLKQTEVDCEILKRCCESLTGENQRLKHELLQLQR 180
                          69***********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.25E-1977149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-1977147IPR009057Homeodomain-like
PROSITE profilePS5007116.89288148IPR001356Homeobox domain
SMARTSM003896.3E-1490152IPR001356Homeobox domain
CDDcd000861.20E-1392149No hitNo description
PfamPF000461.1E-1592146IPR001356Homeobox domain
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PfamPF021833.8E-9148179IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-12148190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MYSASAMEAA ENFGKSWLGL GIGGGDLKRR SSAAVRLDLL FPQQSVKEEA AVGTKAEKGA  60
RKRLKITDDG DGRRSLESSP SDDGGDGCAG TRKKLRLTKE QSTLLEDTFR AHNILSHAQK  120
HELAHQVNLS ARQVEVWFQN RRARTKLKQT EVDCEILKRC CESLTGENQR LKHELLQLQR  180
SAAAGLCVQF PRRAPATATI CPSCEKVTVT TSGGETSNKS SSSYSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096TRKKLRL
2140148RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG379700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554311e-44EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813457.11e-124homeobox-leucine zipper protein HOX18-like
SwissprotQ5Z6F64e-59HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A2S3HGQ71e-123A0A2S3HGQ7_9POAL; Uncharacterized protein
STRINGPavir.Da00162.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-45homeobox from Arabidopsis thaliana