PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG377700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 415aa    MW: 44008.7 Da    PI: 5.9101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG377700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17327363135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt+   Tp++Rrgpdg++tLCnaCGl+++ kgl
  Pavir.4KG377700.1.p 327 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 363
                          ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.243189224IPR010399Tify domain
SMARTSM009796.1E-12189224IPR010399Tify domain
PfamPF062004.7E-13192223IPR010399Tify domain
PROSITE profilePS5101713.404251293IPR010402CCT domain
PfamPF062031.0E-15251293IPR010402CCT domain
SMARTSM004011.1E-12321379IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.605321369IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-12325375No hitNo description
Gene3DG3DSA:3.30.50.102.7E-16326368IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.89E-15326369No hitNo description
PROSITE patternPS003440327354IPR000679Zinc finger, GATA-type
PfamPF003201.5E-15327363IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSPSRAHSHP PKRNQIEILG ARVTLHPHPI VRSDPVRSPA AQSMSHHDGS KPYQPRRGPE  60
RPPQPADEVA APPPAAAAAA PAPAVDHLAA VAAEADALNR YTDHQHQQQQ QQQHQQLQGH  120
EQVGEEEEDE DEEEDEMEDD EDEQEGQDGS VGGEHVPMDA DAAAAAAAAA AAAGAQMDPH  180
AAMVPGAVPP MAPNQLTLSF QGEVYVFDSV SPDKVQAVLL LLGGRELNNA GLGNAASSSG  240
AYNKRVNFPH RVASLMRFRE KRKERNFDKK IRYSVRKEVA LRMQRNRGQF TSSKPKPDEI  300
AASEITTADG SQNWGSVEGR PPSAAECHHC GTSATATPMM RRGPDGPRTL CNACGLMWAN  360
KGLLRDLSKA PVPLQAVQSA PVLDGGQNGS VIGNPGGGLE SSASAMAHGH ESSM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG377700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812855.10.0GATA transcription factor 20-like isoform X1
SwissprotQ5Z4U51e-133GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2S3HGP80.0A0A2S3HGP8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DUK60.0A0A2T7DUK6_9POAL; Uncharacterized protein
STRINGPavir.Da00166.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-61ZIM-like 1