PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG368700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 194aa MW: 20981.2 Da PI: 8.4884 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 25.8 | 2.4e-08 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vkg++++h+kSHLQ+YR+ Pavir.4KG368700.2.p 1 MGVKGVSISHIKSHLQMYRS 20 99*****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-7 | 1 | 21 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGVKGVSISH IKSHLQMYRS SSNSSSAHQS SLQKSTSSSN RKRVFLNRED HCAYASPDGN 60 TVASDKNIYA ALLHGCSQWS PYQIPSLQEV FRSWEQSRGR IPGNSNVLTI EKAAVKPSHT 120 ASNRRPDEKQ TGCDLTLSIG LWEDASSDAD GSSTISEELR ATAAGSRRVA TVKEEESKPA 180 LNLDLTISSS WLA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG368700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810426.1 | 1e-113 | probable transcription factor KAN3 | ||||
TrEMBL | A0A3L6S1V1 | 1e-113 | A0A3L6S1V1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Da00200.1.p | 1e-137 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG368700.2.p |