PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG368100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 338aa    MW: 36401 Da    PI: 7.7535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG368100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-1377121147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Pavir.4KG368100.1.p  77 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 121
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-1671127IPR009057Homeodomain-like
PROSITE profilePS5129414.74672126IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1875124IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-676117IPR009057Homeodomain-like
SMARTSM007172.7E-1076124IPR001005SANT/Myb domain
PfamPF002491.3E-1077121IPR001005SANT/Myb domain
CDDcd001678.57E-879122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVSMSTTPKP LDSAAAAVAG GGGDDGGGGG GGGGKQPQRM RGAAVMAPPP MAVPAPAPAA  60
GEEVRKVRKP YTISKSRESW TEPEHDKFLE ALQLFDRDWK KIEAYVGSKT VIQIRSHAQK  120
YFLKVQKNGT GEHLPPPRPK RKAAHPYPQK ASKTVSQAVL SQQLPQREQS SVMSMDTSTA  180
VRNANANSAM ASWDNTPVQP LSASHVHGTV ATNNCSSSIE SPSGTWPTSE AVEQENVVPP  240
LRAMPDFARV YSFLGSIFDP DTNGHLQRLK AMDPIDVETV LLLMRNLSTN LTSPDFEEHR  300
KLLSSYSYGS DDYIKSEGME NLGSPQSCHL PFMVTSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.99000.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG368100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812931.10.0protein REVEILLE 6-like
SwissprotQ8H0W31e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2T7DVG30.0A0A2T7DVG3_9POAL; Uncharacterized protein
STRINGPavir.Da00204.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-80MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]