PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG363800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 319aa MW: 33619.5 Da PI: 5.5486 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.4e-06 | 1 | 44 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e ++ C+ + lC+ C +H H +vp+ Pavir.4KG363800.1.p 1 MCEVCELAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 44 5*****************************44677777888775 PP | |||||||
2 | CCT | 70.6 | 3.8e-24 | 244 | 287 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a Pavir.4KG363800.1.p 244 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 287 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.1E-8 | 1 | 44 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.466 | 1 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.27E-8 | 1 | 44 | No hit | No description |
Pfam | PF06203 | 6.8E-18 | 244 | 286 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 244 | 286 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MCEVCELAPA AVTCKADAAV LCAACDADIH DANPLARRHA RVPVAPIGSE AAASAVEAML 60 FGTGDGDPAA PEAEEPQDAA AGHGHGQLQH HHQHALNLNV EAKDMKLDYL FSDLDPYLSV 120 DIPRFQHADS VVPSGVGAGA AAGAVELDFT CGIGVKPSSY SSYTATSFAH SGSSSEVGVV 180 PEAFCGGGAG TFELDFTRPK PQAYMPYTAT PQSHSVSSVD VEVAAAERGD MAAARPVPLV 240 GESREARLMR YREKRKNRRF EKTIRYASRK AYAETRPRIK GRFAKRADHD ADDAEAEAAV 300 PSPASYVLDF GYGVVPSF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.609 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG363800.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812707.1 | 1e-148 | zinc finger protein CONSTANS-LIKE 5-like | ||||
TrEMBL | A0A3L6PCM1 | 1e-154 | A0A3L6PCM1_PANMI; Zinc finger protein CONSTANS-LIKE 5-like | ||||
STRING | Pavir.J19402.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 5e-22 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG363800.1.p |