PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG331500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27062.2 Da PI: 10.8614 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.7 | 7.8e-10 | 34 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GV ++ +r+ A ++ p g ++ +lg++ t+eeAa a++aa+++ g Pavir.4KG331500.1.p 34 RYRGVQRR--GNRYGAVVWNP--AG-KRAMWLGSYATPEEAAHAYDAAARRVLG 82 79***644..68*****6665..33.6**********************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-13 | 34 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-12 | 34 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-17 | 34 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-5 | 34 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.974 | 34 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MPGGSVIELA REAAAAARNE RRARGDAPLP PPRRYRGVQR RGNRYGAVVW NPAGKRAMWL 60 GSYATPEEAA HAYDAAARRV LGRWARPNFP DPAARRRPTA LSAAVGALED LVRAARADQE 120 PAARQQQQQP APRAQVPFPH WAAPALAPAG AAAQPQRQQR AVFTYRHAAT PSSPAAAIYA 180 AAYDGPFFEV TLLPSAYAAA PELNRPASSA GPVGGASLSP SAAAPERLIE PDQAVVGDNF 240 TDDGASSSSA TRAFFW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG331500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811437.1 | 4e-66 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A2T7DW85 | 3e-68 | A0A2T7DW85_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db00701.1.p | 1e-26 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17311 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG331500.1.p |