PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG320600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 510aa    MW: 56362.4 Da    PI: 4.3503
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG320600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-1866113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT++Ed++l+d+v+ +G g+W+ + r  g++R++k+c++rw ++l
  Pavir.4KG320600.2.p  66 KGPWTPQEDKRLKDYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 113
                          79******************************************9986 PP
2Myb_DNA-binding42.51.5e-13119162146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++ +eE +++++ + ++G++ W++ a++++ gRt++++k++w++
  Pavir.4KG320600.2.p 119 KGPFDAEEVDKIIKFHIMWGNK-WAKMASHLP-GRTDNEIKNYWNT 162
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.25761117IPR017930Myb domain
SuperFamilySSF466891.61E-2963160IPR009057Homeodomain-like
SMARTSM007171.0E-1565115IPR001005SANT/Myb domain
PfamPF002491.4E-1666113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2467120IPR009057Homeodomain-like
CDDcd001671.34E-1168113No hitNo description
PROSITE profilePS5129417.98118168IPR017930Myb domain
SMARTSM007178.6E-15118166IPR001005SANT/Myb domain
PfamPF002492.2E-12119162IPR001005SANT/Myb domain
CDDcd001673.26E-10121164No hitNo description
Gene3DG3DSA:1.10.10.605.6E-23121166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MTVVKVEPEP ALELASVAVA EARAEELSPP LSYGEDEEEE DDDEEEDDEE TDSEGYGGGG  60
APPLKKGPWT PQEDKRLKDY VEAHGEGNWN QVQRNAGLNR CGKSCRLRWA NHLRPDLKKG  120
PFDAEEVDKI IKFHIMWGNK WAKMASHLPG RTDNEIKNYW NTRLKRHQRA GLPIYPEYLL  180
SRVPDQDMNC HTPDESRGKK RSNELPQEKV VGMDDLVGDF MVFQHLDYGK DPVVPANPLK  240
RHASTGDLSC VQIPANIEKT FYSNDLNYVL TKSQSMPLGS AIANGYPTFD GNLSTSGTIH  300
GSMKTELPSF QCSKYDFSNG WLLQCPSASI EQQIDTFIQS PESMSSHNNG MLGTIINNGD  360
VLDDPTKSGR VFEMPVPLGC NIISQSNDYP MWHPSSSVNG DCEPDACLFT EIQDSNSPSG  420
SDAIFTLGKS YPDAIFSVAG MPGTSLEASF LNDDSLLLKD QSYFYPSGSF FDEDSCEERK  480
PLIDAGQWFD SSAWKSVPGA CNTPDFPGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27601661106B-MYB
1h8a_C9e-276216623126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.267010.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG320600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794391e-107HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812566.10.0transcription factor GAMYB-like isoform X2
TrEMBLA0A2T7DWT60.0A0A2T7DWT6_9POAL; Uncharacterized protein
STRINGPavir.Da00534.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-54myb domain protein 33