PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG320600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 511aa MW: 56419.5 Da PI: 4.3503 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 66 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d+v+ +G g+W+ + r g++R++k+c++rw ++l Pavir.4KG320600.1.p 66 KGPWTPQEDKRLKDYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 113 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 42.5 | 1.5e-13 | 119 | 162 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++ +eE +++++ + ++G++ W++ a++++ gRt++++k++w++ Pavir.4KG320600.1.p 119 KGPFDAEEVDKIIKFHIMWGNK-WAKMASHLP-GRTDNEIKNYWNT 162 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.257 | 61 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-29 | 63 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 65 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 66 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-24 | 67 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-11 | 68 | 113 | No hit | No description |
PROSITE profile | PS51294 | 17.98 | 118 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-15 | 118 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 119 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.27E-10 | 121 | 164 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-23 | 121 | 166 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MTVVKVEPEP ALELASVAVA EARAEELSPP LSYGEDEEEE DDDEEEDDEE TDSEGYGGGG 60 APPLKKGPWT PQEDKRLKDY VEAHGEGNWN QVQRNAGLNR CGKSCRLRWA NHLRPDLKKG 120 PFDAEEVDKI IKFHIMWGNK WAKMASHLPG RTDNEIKNYW NTRLKRHQRA GLPIYPEYLL 180 SRVPDQDMNC HTPDESRGKK RSNELPQEKV VGMDDLVGDF MVFQHLDYGK DPVVPANPLK 240 RHASTGDLSC VQIPANIEKT FYSNDLNYVL TKSQSMPLGS AIANGYPTFD GNLSTSGTIH 300 GSMKTELPSF QCSKYDFSNG WLLQCPSASI EQQIDTFIQS PESMSSHNNG MLGTIINNGD 360 VLDDPTKSGR VFEMPVPLGC NIISQSNDYP MWHPSSSVNG DCEPDACLFT EIQDSNSPSG 420 GSDAIFTLGK SYPDAIFSVA GMPGTSLEAS FLNDDSLLLK DQSYFYPSGS FFDEDSCEER 480 KPLIDAGQWF DSSAWKSVPG ACNTPDFPGP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 60 | 166 | 1 | 106 | B-MYB |
1h8a_C | 9e-27 | 62 | 166 | 23 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.26701 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG320600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679439 | 1e-107 | HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812565.1 | 0.0 | transcription factor GAMYB-like isoform X1 | ||||
TrEMBL | A0A2T7DWT6 | 0.0 | A0A2T7DWT6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00534.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12902 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 1e-54 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG320600.1.p |