PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG310700.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 549aa    MW: 59504.1 Da    PI: 6.4579
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG310700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.98.4e-2794147155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++W  eLH++Fveav+q+ G ++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+
  Pavir.4KG310700.5.p  94 RQRVQWPGELHRKFVEAVNQI-GMDRAVPKKILEVMNVDSLTRENVASHLQKYRI 147
                          58*******************.********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011012.237129IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.3E-6266No hitNo description
SuperFamilySSF466897.88E-1991151IPR009057Homeodomain-like
PROSITE profilePS5129411.5191150IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2792151IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2395147IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKGINHGACD YLVKPVRLEQ LRGIWTHVVR NSKCDPRNSI SGGNDDSGKK IQSGDGDKGE  60
KDGENHARKY SKKKKKDIDC AGEDKENASS TQKRQRVQWP GELHRKFVEA VNQIGMDRAV  120
PKKILEVMNV DSLTRENVAS HLQKYRIFLR KLSEGKLNKS SPFADGHRAW CSDWVAESSE  180
HHPELGRYQS VPSFVASPSS SNPFARMNSP SALAHTFLPT QSVQLVSSQR NACIPQRDME  240
LVGHGVNLSG ASQCFPSNPS SSFANIPNGV SLASSKRFPL PRSCSSYASI LRGKILGANR  300
GIPFDDTADG EILAPSIHLP LQSPELVNQL PDQIQSSFAG LFNQVAREAH QFAGHSNSWK  360
AAVASRFPDL SHNVEMPKDP SQGNIDKINQ LSRLTASSGQ ISIFENLYQN QIAGIIGKTA  420
PALSFNEQVA PFNFGSSTLD TSMPIGNSDL GSSSSTRPSL PNLQIDDSVM PAQILNGEDA  480
SGNHPEGGTI NQQTVGNQVI SNNEFLVGTS EVQNGASSGD LDDFFADMVD EQDFINNGDA  540
FLGGDWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-2290153164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG310700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.10.0two-component response regulator ORR25-like isoform X1
TrEMBLA0A2T7DWI20.0A0A2T7DWI2_9POAL; Two-component response regulator
STRINGPavir.J10177.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-39response regulator 2