PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG310700.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 561aa    MW: 60794.5 Da    PI: 6.1239
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG310700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.88.7e-27106159155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++W  eLH++Fveav+q+ G ++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+
  Pavir.4KG310700.4.p 106 RQRVQWPGELHRKFVEAVNQI-GMDRAVPKKILEVMNVDSLTRENVASHLQKYRI 159
                          58*******************.********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001562.17E-5134No hitNo description
PROSITE profilePS5011016.101141IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.7E-10278No hitNo description
SuperFamilySSF521721.71E-7243IPR011006CheY-like superfamily
PROSITE profilePS5129411.51103162IPR017930Myb domain
SuperFamilySSF466898.24E-19103163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-27104163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23107159IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVLSANDETE TVMKGINHGA CDYLVKPVRL EQLRGIWTHV VRNSKCDPRN SISGGNDDSG  60
KKIQSGDGDK GEKDGENHAR KYSKKKKKDI DCAGEDKENA SSTQKRQRVQ WPGELHRKFV  120
EAVNQIGMDR AVPKKILEVM NVDSLTRENV ASHLQKYRIF LRKLSEGKLN KSSPFADGHR  180
AWCSDWVAES SEHHPELGRY QSVPSFVASP SSSNPFARMN SPSALAHTFL PTQSVQLVSS  240
QRNACIPQRD MELVGHGVNL SGASQCFPSN PSSSFANIPN GVSLASSKRF PLPRSCSSYA  300
SILRGKILGA NRGIPFDDTA DGEILAPSIH LPLQSPELVN QLPDQIQSSF AGLFNQVARE  360
AHQFAGHSNS WKAAVASRFP DLSHNVEMPK DPSQGNIDKI NQLSRLTASS GQISIFENLY  420
QNQIAGIIGK TAPALSFNEQ VAPFNFGSST LDTSMPIGNS DLGSSSSTRP SLPNLQIDDS  480
VMPAQILNGE DASGNHPEGG TINQQTVGNQ VISNNEFLVG TSEVQNGASS GDLDDFFADM  540
VDEQDFINNG DAFLGGDWDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22102165164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG310700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.10.0two-component response regulator ORR25-like isoform X1
TrEMBLA0A2T7DWI20.0A0A2T7DWI2_9POAL; Two-component response regulator
STRINGPavir.J10177.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-42response regulator 2