PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG309800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 341aa MW: 35592.2 Da PI: 8.9466

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG309800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	5e-09	174	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq Pavir.4KG309800.2.p 174 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 221 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-15	168	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-9	168	225	No hit	No description
PROSITE profile	PS50888	14.627	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-14	170	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	174	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MRRPSPPPQE LPAAGAEIQA ALIPAAAGQA SSAPPAAAGT RGGGGGSFTA LLGLPTSQAM 60 ELLLPRAAAP APAPSPAPAP ALAPTFPSDP HLVDRAARFS AFASPSPSSP SPTPPPAPPA 120 AAAKRKADPA DRASKGKAAR KGKTAEEKPA GGDGEDDKPA YVHVRARRGQ ATDSHSLAER 180 ARREKINARM ELLKELVPGC SKVSGTALVL DEIINHVQSL QRQVEYLSMR LAAVNPRVDF 240 GGLDSFLTTE CGRIAGLNCK NGIDLEQVTW PEMGVHGARH LLQLQQQFWH GDLAHQHQAV 300 SQWEKRGDEN PPVFSSSSPS LFGYDLTSSG KIACNPITPF *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.18773	0.0	callus\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG309800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	0.0	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347160.1	1e-167	uncharacterized protein LOC100273300
Swissprot	Q8VZ02	5e-64	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1D6P4V3	1e-167	A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRING	Pavir.Da00516.1.p	1e-177	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	2e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.4KG309800.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]