PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG309800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 344aa    MW: 35899.5 Da    PI: 9.2013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG309800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75.1e-09174221455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  Pavir.4KG309800.1.p 174 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 221
                          8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.91E-9168225No hitNo description
SuperFamilySSF474593.01E-15168239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14170238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRRPSPPPQE LPAAGAEIQA ALIPAAAGQA SSAPPAAAGT RGGGGGSFTA LLGLPTSQAM  60
ELLLPRAAAP APAPSPAPAP ALAPTFPSDP HLVDRAARFS AFASPSPSSP SPTPPPAPPA  120
AAAKRKADPA DRASKGKAAR KGKTAEEKPA GGDGEDDKPA YVHVRARRGQ ATDSHSLAER  180
ARREKINARM ELLKELVPGC SKVSGTALVL DEIINHVQSL QRQVEYLSMR LAAVNPRVDF  240
GGLDSFLTTE CGRIAGLNCK NGIDLEQVTW PEMGVHGARH LLQLQQQFWH GDLAHQHQAV  300
SQWEKRGDEN PPVFSSSSPS LFGYDLTSSG AQQPPASKLK TEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.187730.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG309800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347160.11e-176uncharacterized protein LOC100273300
SwissprotQ8VZ023e-64BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2T7DWJ71e-172A0A2T7DWJ7_9POAL; Uncharacterized protein
STRINGPavir.Da00516.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-50bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]