PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG288700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GATA

Protein Properties

Length: 368aa MW: 38758 Da PI: 9.2796

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG288700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.6	1.4e-17	184	217	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Pavir.4KG288700.1.p 184 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 217 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.24E-12	176	218	No hit	No description
SMART	SM00401	4.3E-16	178	230	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.268	182	214	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.8E-14	182	217	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.03E-14	183	215	No hit	No description
PROSITE pattern	PS00344	0	184	209	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.8E-15	184	217	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MSAIYMSQLS TALPLMEGAD HHQDHHHHHQ GHFQAFTLPK DPPILFPFVI SSSSSANESS 60 LSYGSPEGHH HLFRQQHQAM LEPQHMIGGS SSASVFATPF PTVESIRDDM IEPSSYDPYD 120 MGRLQVVGSL ETAGSWTPPA KMRITRKATA DPGAAAKKPR RKAQGYEDMM SMGGQPNLGV 180 IRVCSDCNTT KTPLWRSGPC GPKSLCNACG IRQRKARRAM MASGGGGSGP VPADGAKAAT 240 ATPRGAMAAP AHPKVKKEKR GDLDRSLPFK KRGKVVQDHA GAAAPPAAAH KAVVQPAAEV 300 ADDAGPSSRD LVDNIGLLSW SRSPPAPPSA AAASCSFRAS PGLPVQQDEI TDAAMLLMTL 360 SCGLVRS*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MSAIYMSQLS TALPLMEGAD HHQDHHHHHQ GHFQAFTLPK DPPILFPFVI SSSSSANESS  60
LSYGSPEGHH HLFRQQHQAM LEPQHMIGGS SSASVFATPF PTVESIRDDM IEPSSYDPYD  120
MGRLQVVGSL ETAGSWTPPA KMRITRKATA DPGAAAKKPR RKAQGYEDMM SMGGQPNLGV  180
IRVCSDCNTT KTPLWRSGPC GPKSLCNACG IRQRKARRAM MASGGGGSGP VPADGAKAAT  240
ATPRGAMAAP AHPKVKKEKR GDLDRSLPFK KRGKVVQDHA GAAAPPAAAH KAVVQPAAEV  300
ADDAGPSSRD LVDNIGLLSW SRSPPAPPSA AAASCSFRAS PGLPVQQDEI TDAAMLLMTL  360
SCGLVRS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269\|PubMed:23548780}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG288700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812836.1	0.0	putative GATA transcription factor 22
Swissprot	Q6YW48	1e-69	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A2S3HIY4	0.0	A0A2S3HIY4_9POAL; Uncharacterized protein
STRING	Pavir.Da00760.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	1e-20	GATA family protein

Link Out ? help Back to Top
Phytozome	Pavir.4KG288700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]