PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG286000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 375aa MW: 40717.5 Da PI: 5.625 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.3 | 5.6e-15 | 119 | 153 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cg+t+Tp+WR gp g+ tLCn CG++ r g+ Pavir.4KG286000.1.p 119 CVDCGATETPQWRAGPTGPGTLCNGCGIRCRAAGE 153 *****************************997765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.6E-10 | 113 | 166 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-11 | 115 | 157 | No hit | No description |
PROSITE profile | PS50114 | 11.068 | 118 | 152 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.7E-11 | 118 | 152 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.99E-10 | 118 | 147 | No hit | No description |
Pfam | PF00320 | 2.6E-12 | 119 | 153 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.42E-5 | 250 | 282 | No hit | No description |
SMART | SM00401 | 0.017 | 250 | 296 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MTCSPCPTSL SRSEQETPVS DEQQLHPPGS AVPSRAAARD MAGSGAAERE REREGRRLAY 60 DDSAWTLLLA AVPRRKRSRR GPASSRWWRE FRRPVPVPVP PPPAAKEPVA RKAARAGRCV 120 DCGATETPQW RAGPTGPGTL CNGCGIRCRA AGERWGQRRR PWRATARTVV SDHQPPPQVG 180 QPIPDLESPP DGQICEKGLA PAPAPDRVTS PPPATESLPS LRTARTDPDS EKQPSKEEEE 240 EEEEPAKKKT SPDKLCDHCA SSSTPKWLCN ACGVRYSQGR LLPEYRRQLK NKQQPPPPAA 300 LSQPVDDSQS VDLMLLPRPG EYLASDLRVG DIDDDSGDAA ANPTDKPGSL QLDPFLLEGP 360 AAPMIVDEEE EEPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG286000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805594.1 | 5e-95 | biofilm regulator 1-like | ||||
TrEMBL | A0A3L6SWJ9 | 1e-121 | A0A3L6SWJ9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J06380.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7273 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 2e-10 | GATA transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG286000.1.p |