PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG279900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 270aa MW: 29925 Da PI: 9.8046

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG279900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.1	4.1e-24	12	100	47	128
NAM 47 LpkkvkaeekewyfFskrdkkya.....tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 Lp+ ++ +e+ewyfF++rd +++ g r+nr+t++g+Wkatg+d++v ++ ++l+glkktL+ y+grap+g ktdWvm+eyr+ Pavir.4KG279900.1.p 12 LPALAHLGEREWYFFVPRDGRKQqaaggGGGRPNRTTERGFWKATGSDRAVRCAsdPKRLIGLKKTLIDYEGRAPRGPKTDWVMNEYRA 100 6655566899******9887745544466****************998666778*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.794	1	136	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-28	11	136	IPR003441	NAC domain
Pfam	PF02365	7.5E-11	22	99	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MWAPQWIGVG KLPALAHLGE REWYFFVPRD GRKQQAAGGG GGRPNRTTER GFWKATGSDR 60 AVRCASDPKR LIGLKKTLID YEGRAPRGPK TDWVMNEYRA SPTTHRPCPP PPASHHPSIT 120 GWWIQEDIVL CKIYRKAVSL KELEQRVAME ELARASATPS SASHNTGSPT DSTSMSSSDH 180 QQHQQQQGEA AVMTTMMMGV GIPPARRSIC MKKEAAESSA AAVLRPATLS LPQLEVAKQQ 240 QQEWMQDPFL TQLRSPWMDS PYYASVLNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-22	12	139	62	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-22	12	139	62	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-22	12	139	62	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-22	12	139	62	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-22	12	139	65	171	NAC domain-containing protein 19
3swm_B	4e-22	12	139	65	171	NAC domain-containing protein 19
3swm_C	4e-22	12	139	65	171	NAC domain-containing protein 19
3swm_D	4e-22	12	139	65	171	NAC domain-containing protein 19
3swp_A	4e-22	12	139	65	171	NAC domain-containing protein 19
3swp_B	4e-22	12	139	65	171	NAC domain-containing protein 19
3swp_C	4e-22	12	139	65	171	NAC domain-containing protein 19
3swp_D	4e-22	12	139	65	171	NAC domain-containing protein 19
4dul_A	3e-22	12	139	62	168	NAC domain-containing protein 19
4dul_B	3e-22	12	139	62	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG279900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085943	1e-60	BT085943.1 Zea mays full-length cDNA clone ZM_BFc0087P13 mRNA, complete cds.
GenBank	EU967633	1e-60	EU967633.1 Zea mays clone 304978 mRNA sequence.
GenBank	JX428481	1e-60	JX428481.1 Zea mays subsp. mays clone pUT3078 NAC42 NAC type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966508.1	1e-108	NAC domain-containing protein 67
Swissprot	Q10S65	5e-66	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1E5VRV7	1e-111	A0A1E5VRV7_9POAL; NAC domain-containing protein 35
STRING	Pavir.J01198.1.p	1e-113	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-40	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Pavir.4KG279900.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]