PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG255200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 344aa    MW: 38736.9 Da    PI: 6.7983
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG255200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.3e-52101391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+   ++ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg
  Pavir.4KG255200.1.p  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATG 98 
                          69****************************.9***************943444442456******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk+++  + + +gl+ktLvfy grap+g+ktdW+mheyrl
  Pavir.4KG255200.1.p  99 RDKAIFLGNARRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139
                          *******999*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-586159IPR003441NAC domain
PROSITE profilePS5100557.83810159IPR003441NAC domain
PfamPF023651.3E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MHPSGGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNDWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNARR IGLRKTLVFY  120
IGRAPHGKKT DWIMHEYRLD EENVEIQEDG WVVCRVFKKK NYQRGVNPAE MAALDDDELQ  180
PFPVPVPGAL PTDHKHNPHL MQYDQFPSFD PTMQLPQLMS ADQPVQTLLP SQHGVPIAMS  240
SLDVECSQNL MKLTSNGSDG MPHSAGGGVD RFTGTTDWSI LDKLLASHQN LDQLFQGRVS  300
TASAAQMAPY HEQLMELGGS SSLQRLPLQY LGGEAADLLR FPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-51816115167NO APICAL MERISTEM PROTEIN
1ut4_B6e-51816115167NO APICAL MERISTEM PROTEIN
1ut7_A6e-51816115167NO APICAL MERISTEM PROTEIN
1ut7_B6e-51816115167NO APICAL MERISTEM PROTEIN
4dul_A6e-51816115167NAC domain-containing protein 19
4dul_B6e-51816115167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG255200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8339650.0AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812849.10.0NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-124NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A3L6RYV60.0A0A3L6RYV6_PANMI; NAC domain-containing protein 76
STRINGPavir.Da01009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-101NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]