PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG245800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 801aa    MW: 91823.5 Da    PI: 8.4494
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG245800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.23.7e-2052174290
                 FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk................................tekerrtra 56 
                          fYn+YA  vGFs+ ks +++s     ++e+t+r ++C++ g+ + e+                                    ++rr+++
  Pavir.4KG245800.1.p  52 FYNNYALIVGFSTIKSGTYSSrekGATREVTRRIYKCNRRGNLSLEDVGkknqhesgvqissdikkrkvlhmnndeaepvpVARKRRHKV 141
                          9**************9999984334567899**********98887766678999*************************9999****** PP

                 FAR1  57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           ++t+C+a ++++k+ +g+w vt+l+leHnH+l 
  Pavir.4KG245800.1.p 142 IDKTKCQAGMTITKK-NGVWTVTRLNLEHNHNLL 174
                          **************9.***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-1852174IPR004330FAR1 DNA binding domain
PfamPF105511.1E-29294387IPR018289MULE transposase domain
PROSITE profilePS509669.606520556IPR007527Zinc finger, SWIM-type
SMARTSM005750.0036531559IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MEDDITEEDI KIFKHNETVE AAAISLIQEG GEGLHVPRID MQFEIDEEAH AFYNNYALIV  60
GFSTIKSGTY SSREKGATRE VTRRIYKCNR RGNLSLEDVG KKNQHESGVQ ISSDIKKRKV  120
LHMNNDEAEP VPVARKRRHK VIDKTKCQAG MTITKKNGVW TVTRLNLEHN HNLLAPALAK  180
LLRSHRFFTE QEKAMIKSFI DVNVPNRKIL AFLSFLSGMK NTNLVKTDIS NYKTRVMKEC  240
GENDISQVVN FLKQKQAEDP MLFFTFDTGE DSKVRNIFWA YGTSRICYEH YGDVISFDTT  300
YETNRYNLKF APFVGINGHG DNLLLTGAIL SDETIPTFRW LFSTFLSCMG GKAPKSIITD  360
QDAVMRAAIA LEFPDTIHRN CLFHIMSKAE ILWEQDLYDI IFNSLTEEEF ERLWAYMLNE  420
HKNNFFPFIC STSRSEGMNA RFKENVGPTS SLILFVKEYD RIIANMDEKG NLRDKNKAQE  480
FQQLVKATGR YVADEVEKGK VYVIYKSEEH TKDEVRPRKY LVLVDMAEEN YVCICARFQK  540
DGLLCVHVLR TLIQLNKHTL PEKYFIDRWR PVERKQVRNA TTFIPTELTG SNCTLRYNLL  600
SKCFVDVASE SCLNLERTNY MVAELRRIKS ELRKIPVTEE NENIINDSRQ EMNTNLTSEI  660
DSYTNNEDPR QITDKHTSTS LICNGTRSTT DYEVPTLIVQ QKDFPDSGKD TDLFKNPIVV  720
PRKGRPKTMQ KSRRLVPYGE IVRTKKQITC STCSSHEHNR ATCTKVPGEG GAVKKKASTK  780
KTANPTQTTN NTDGRQHGES *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116137KRKVLHMNNDEAEPVPVARKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG245800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J19214.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-68FAR1-related sequence 5