PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG244300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 383aa    MW: 44688.6 Da    PI: 4.7359
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG244300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.71.3e-25209307191
                 FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          kf+n Y++ +GF v+++++ ++   krn+ei++ t++C+++g ++++k+        ++er t++  +t+Ck++++++k+ +g w+vt+l
  Pavir.4KG244300.1.p 209 KFFNYYGYLAGFAVVIAHHARTqsrKRNNEIIRITYKCNNQGMQDTSKEGntqeeeITSERDTNVLVKTNCKCCMVISKR-KGIWRVTRL 297
                          6******************99988899*****************999988777777777888******************.********* PP

                 FAR1  82 eleHnHelap 91 
                          +leHnH+++p
  Pavir.4KG244300.1.p 298 QLEHNHPMSP 307
                          *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-24209307IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSCSQMLRQM MITQNMSSIN DEQLTYLMDA PIDSFTRMLT EPYYFENNMV ITTSRIGEET  60
TDYTYGNTFA KSNVPSNECD NTSNKEASTL NCNSEIENLD PTEKELEEHW YIDLFKRIEH  120
SEEGMREQIH GEREEEDEQG QEQEQEDVVN NTNKNTSQDQ QTEQLEEEDV ENFLEYERIA  180
SSQEKVSEID SQYVPHEGME FSTSSEGHKF FNYYGYLAGF AVVIAHHART QSRKRNNEII  240
RITYKCNNQG MQDTSKEGNT QEEEITSERD TNVLVKTNCK CCMVISKRKG IWRVTRLQLE  300
HNHPMSPGAK YFRAHKNMTD QEKKMIRTLH ECNIPTKKMM YLLSFLRGGL GATPYRDKDI  360
TNYRGKISRE TNQNDMMQAL MY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG244300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Da00808.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2306624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-11FAR1-related sequence 5