PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG243900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 483aa    MW: 56535.3 Da    PI: 8.487
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG243900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.24.8e-221192190
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         ++Yn+YA +vGFsvrks+sk + ++++i+++  vCs+eg+r++++++       +  trtgC+a+++ + +k+g w v+k++l+HnH la
  Pavir.4KG243900.1.p 11 EMYNTYAGKVGFSVRKSHSKLR-EDKTIYQKYIVCSNEGYRRNKSSQ-------KDITRTGCEARVQFSVSKEGIWTVQKVVLDHNHYLA 92
                         58**************998776.8888**************998766.......99*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-191192IPR004330FAR1 DNA binding domain
PfamPF105511.9E-12216269IPR018289MULE transposase domain
PROSITE profilePS5096610.138430461IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-6432459IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-8436463IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAFDSEEKAW EMYNTYAGKV GFSVRKSHSK LREDKTIYQK YIVCSNEGYR RNKSSQKDIT  60
RTGCEARVQF SVSKEGIWTV QKVVLDHNHY LASPNKLHKL KSHRRVTEAD RMLISQIREA  120
GMKPAQVYEF MKEFYGGADK VPLSRMDCNN AIGRERKKYL ESNDAQTLLE YLKNKQIEDP  180
TFFYAIEIDE EDGRIANFFW ADGQSIMDYA CFGDAVSFDT TFKTNKFEMP FAPILGTNHH  240
KQTIIFGAAL IFNETIESFR CVYEDRSEAI FIEKWNELLS EYKLEENKWM ENLYDLRKKW  300
AAVYRDSFTA DMNSTQRSEG MNNVFKKRFR RRLGLSELLA ECEKVSASLR ENELDADFNS  360
RRKTPVTYIP NLPMLKTAAE SYTRRMYSEF EEEFKEQFSF SWKLVQIDGS ILTYEVAHMH  420
SNRGATVQFS TVDMTVTCSC RKFECIGILC KHALKVLNAN NVFNLPPQYI MGRWTKYAKR  480
GFY
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG243900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670948.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T8I6E30.0A0A2T8I6E3_9POAL; Uncharacterized protein
STRINGORGLA02G0073800.11e-165(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-85FAR1-related sequence 5