PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG223800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9755.61 Da PI: 9.532 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.7e-07 | 4 | 50 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WTt + + +a + + ++ +W ++a+ +g g+t ++k + Pavir.4KG223800.1.p 4 SWTTRQNKVFEEALATYDKDtpdRWQKVAQAVGGGKTVDDVKKQYKE 50 7*****************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.0E-6 | 1 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.172 | 1 | 56 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.62E-11 | 3 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSSSWTTRQN KVFEEALATY DKDTPDRWQK VAQAVGGGKT VDDVKKQYKE LTKDVREMDT 60 AGLQNFQYGG SSSNTSKGGS SSNREQRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 4 | 75 | 10 | 82 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.42603 | 1e-112 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG223800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813658.1 | 4e-43 | uncharacterized protein LOC112890984 isoform X1 | ||||
Refseq | XP_025813659.1 | 4e-43 | uncharacterized protein LOC112890984 isoform X1 | ||||
Refseq | XP_025813661.1 | 1e-43 | protein RADIALIS-like 4 isoform X3 | ||||
Swissprot | Q1A173 | 3e-19 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2S3HJZ1 | 6e-49 | A0A2S3HJZ1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E0D3 | 6e-49 | A0A2T7E0D3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da01122.1.p | 5e-58 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-20 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG223800.1.p |