PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG213900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 360aa    MW: 38104.1 Da    PI: 9.1031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG213900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14133183255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Pavir.4KG213900.1.p 133 RQNHIAVERNRRRQMNEYLAALRSLMPPS---YARRGDQASIVGGAIDFVKELE 183
                          99***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-17130199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.739131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-13133187No hitNo description
PfamPF000101.7E-11133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-11137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MALLEAVVLP PEPDHPRVPC CRSCGTSCVL SGYGVAASAG EFEGIIERGV VVQEDGELPP  60
VVTPPPHGGA WAGGGGGAAT SSWVGPVPST TLATSSARRP VYQPAVTRRR PRRRRGTVAK  120
AARRSPVEAE SHRQNHIAVE RNRRRQMNEY LAALRSLMPP SYARRGDQAS IVGGAIDFVK  180
ELEHHLQSLQ AQRRRHPAAA GHGSECFPGF FTFPQYSTTA AAAAAANDAD DDASGGGCEG  240
RPTTRPAGVA AADVEAAVSE GHATVKVLAP RRRRMLLRLL LGMQHRGLAA LHLNASTTAD  300
QMVLYTFTLK IGDGWPLSSA GDVAAPCTTS SSPAWAPQKN APFILQIKEI YCAYLQLEN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RRPRRR
2132143RQNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG213900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813203.11e-144transcription factor bHLH96-like
TrEMBLA0A2T7E0J41e-146A0A2T7E0J4_9POAL; Uncharacterized protein
STRINGPavir.Db01842.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-42bHLH family protein