PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG205000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 377aa    MW: 40370.7 Da    PI: 8.4895
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG205000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.12.2e-0984125344
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                          + k++rr+++NReAAr+sR RKka+i eL    ++L +  ++
  Pavir.4KG205000.1.p  84 DQKVQRRLAQNREAARKSRMRKKAYIVELVSSRAKLAQLEQE 125
                          679**************************7766666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-582145IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.89884128IPR004827Basic-leucine zipper domain
PfamPF001701.7E-685126IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.6E-886130No hitNo description
SuperFamilySSF579598.75E-786129No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141443.3E-27168246IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAPPPGMAAA AADDGRFCLP WAAAAHFENW GDSGIVATSP LAETTCTDAG GDRHQAQTGG  60
GAITQSAAAY MDSCAASKEG SCRDQKVQRR LAQNREAARK SRMRKKAYIV ELVSSRAKLA  120
QLEQELQRAR QQGMFIASGR SGDHGGSTGG ASAFDLEYAR WLDEHQRHMT DLRVALGAAQ  180
QVIGDDDLRA LVDGAMLHYE QLFRLKGAAT RADAFHVLSG MWASPAERFF MWLGGFRSSE  240
LLAVLARHVG PLTEPQLVGI CGLQRSAQQA EDALSQGMEA LQQALADTLA AAAGGGAAAA  300
GADGVTNYMG QMAVAMGKLA TVENFLRQAD LLRHQTLQQM RRILTARQAA RALLVVSDYF  360
SRLRALSSLW LTRPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG205000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812128.10.0transcription factor TGAL3-like
SwissprotQ5Z6N91e-169TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A2T7E1F90.0A0A2T7E1F9_9POAL; Uncharacterized protein
STRINGPavir.Da01921.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-103bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]