PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG199600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 253aa MW: 28899.1 Da PI: 7.0098 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88 | 8e-28 | 121 | 171 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++e +s+yF++pi +AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl Pavir.4KG199600.1.p 121 ETALTFELVSQYFYMPIMQAARELNVGLTLLKKRCRELGIPRWPHRKMKSL 171 6789*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.747 | 108 | 191 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.3E-22 | 124 | 171 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEANHEESSC LLPYWTSAWA GSDLLEEDAL FSSLSFPSLH FQPSYSTIIT PSNILQDELD 60 AIFKDDVLKH WDEMERAGCK AEDGHKRSPL LCYGEEKEVS SGSDPGAEVA RACRRARPPE 120 ETALTFELVS QYFYMPIMQA ARELNVGLTL LKKRCRELGI PRWPHRKMKS LQSLINNVQV 180 LQEAGKATGE EQLRAVVEML QQEKQLLEQR PYVQLEEKTK RLRQACFKAN YKKRRLLALE 240 AGEAPRRITP KY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG199600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966836.1 | 1e-137 | protein RKD2 | ||||
TrEMBL | A0A3L6RY28 | 1e-147 | A0A3L6RY28_PANMI; Protein RKD2 | ||||
STRING | Pavir.Da01160.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 4e-39 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG199600.1.p |