PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG192700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 442aa MW: 48578.5 Da PI: 7.6274 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.1 | 1.4e-23 | 74 | 139 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll++kf++l+ +++ +++ l+++ak+L v +rRRiYDi+NVLe+++++ +++kn+++w g Pavir.4KG192700.1.p 74 RKQKSLGLLCSKFVALYDREDVETIGLDDAAKQL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 139 79****************9999************...**..****************************87 PP | |||||||
2 | E2F_TDP | 77.1 | 1.7e-24 | 219 | 299 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++ +l+e+a+ L+ e ++++k+RR+YDi+NVL++lnliek ++k+++rw g Pavir.4KG192700.1.p 219 RKEKSLGLLTQNFVKLFLTMEVETFSLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqadTRKPAFRWLG 299 79******************************************************************9999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.3E-26 | 70 | 140 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.59E-16 | 73 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.7E-29 | 74 | 139 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.3E-21 | 75 | 139 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.0E-23 | 216 | 300 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.4E-32 | 219 | 299 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.5E-20 | 220 | 299 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.43E-12 | 221 | 299 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MDAAAAAGPS SSAAPAAAAR PSSGAEPSAA AAAQPAPVAP RMQLLQAPLL GAGGAGSGSG 60 SGDARACRHH AYSRKQKSLG LLCSKFVALY DREDVETIGL DDAAKQLGVE RRRIYDIVNV 120 LESVGILVRR AKNRYTWLGF GGVPAALKEL KERALREMSG SPVFPPMEES STANLSVDED 180 DEKLEDADED AESEKLSQSV DNTSDKPDAP GCRLRSDHRK EKSLGLLTQN FVKLFLTMEV 240 ETFSLDEAAR LLLGEGHAES NMRTKVRRLY DIANVLSSLN LIEKTQQADT RKPAFRWLGQ 300 AKRKQENNTM IALPTARPNK RAFGTDLTNF DNKWGRLDPT TEDKAKLMQG AGNIVKTFER 360 QLGQGNRSDF VYGPFHPAVA KKQESDDHTV RQKERKTIQD WENLAVSFRP QYQNQALNDL 420 FGHYVEAWKS WYLDLTRETS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 3e-39 | 73 | 291 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.28523 | 0.0 | callus| leaf| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG192700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728027 | 0.0 | KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966858.1 | 0.0 | E2F transcription factor-like E2FE | ||||
TrEMBL | A0A3L6S1F2 | 0.0 | A0A3L6S1F2_PANMI; E2F transcription factor-like E2FE | ||||
STRING | Pavir.Da01202.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-101 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG192700.1.p |