PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG191400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-X1
Protein Properties Length: 965aa    MW: 104078 Da    PI: 7.8978
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG191400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.11.2e-05294311118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG H C+  CHeG+CppC
  Pavir.4KG191400.1.p 294 CGVHNCKVNCHEGECPPC 311
                          ****************** PP
2zf-NF-X118.15.8e-06389407119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H Cq lCH G CppC 
  Pavir.4KG191400.1.p 389 CGQHACQLLCHSGHCPPCL 407
                          ******************6 PP
3zf-NF-X116.91.4e-05499514116
             zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                          CG+H C+++CH+ pC+
  Pavir.4KG191400.1.p 499 CGIHACNRTCHPAPCD 514
                          ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.023117135IPR000967Zinc finger, NF-X1-type
PfamPF014227.1119134IPR000967Zinc finger, NF-X1-type
CDDcd060083.72E-12162210No hitNo description
SMARTSM004380.0034172191IPR000967Zinc finger, NF-X1-type
PfamPF014220.024174190IPR000967Zinc finger, NF-X1-type
CDDcd060082.73E-8226269No hitNo description
PfamPF014220.0025236253IPR000967Zinc finger, NF-X1-type
SMARTSM004384.5E-4236255IPR000967Zinc finger, NF-X1-type
CDDcd060088.34E-13284332No hitNo description
PfamPF014227.6E-5294311IPR000967Zinc finger, NF-X1-type
SMARTSM004386.4E-4294313IPR000967Zinc finger, NF-X1-type
CDDcd060086.48E-8379431No hitNo description
PfamPF014221.3E-4389406IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2E-4389408IPR000967Zinc finger, NF-X1-type
PfamPF0142254446462IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34446464IPR000967Zinc finger, NF-X1-type
PfamPF014220.0028499514IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029499534IPR000967Zinc finger, NF-X1-type
PfamPF014228.7536562IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32543564IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MICYDMVRRS APIWSCDSCF SIFHLPCIRK WVRSPASAAD ASPAADPASP SWRCPGCQSV  60
YTTPARDLAY NCFCGRQRDP PNDHFLTPHS CGEPCSKPLE RAEPPGAKGE DADATRCPHV  120
CVLQCHPGPC PPCKAFAPDR PCPCGKQIIV RRCADRSTPV TCGRPCERML PCKRHRCEKV  180
CHTGPCGDCS VVISARCFCG KKNEALPCGD MVVKGKLSEE DGVFSCSEPC GHTLACGNHV  240
CKDMCHPGPC GECEFMPGKV TTCHCGKTRL QESRASCLDP IPTCDKICDK KLPCGVHNCK  300
VNCHEGECPP CLVRVEQKCR CGSSGRMVEC YQVKKEEFHC NKPCGRKKNC GRHRCSECCC  360
PLSRKFAQLE GGDWDPHLCQ ISCGKKLRCG QHACQLLCHS GHCPPCLETI FTDLTCACGR  420
TSIPPPLPCG TPTPSCSHQC SVPQPCGHPA SHSCHFGDCP PCVVPVMREC IGGHVMLRNI  480
PCGSKDIRCN QPCGKNRQCG IHACNRTCHP APCDQPLANG DANSSSGGKA SCGQVCGAAR  540
RECKHTCTAP CHPSSQCPDL RCEFPVSITC SCGRITATVP CGAGGSSSSD NMFEVSIIQK  600
LPMPLQPVES NGRRVPLGQR KLSCDDECAK MEKKRVLAEA FDITPPNLDA LHFGENSSAS  660
DLVSDLFRRD PKWVVAIEER CKFLVLGKVR GSSSNNLKLH VFCPMLKDKR DAIRLIADRW  720
KLSVQSAGWE PKRFITIHVT PKSKPPARIL GSKAGAPVTA THPYFDPLVD MDPRLVVAML  780
DLPRDADVNA LVLRFGGECE LVWLNDKNAI AVFNDPARAA TALRRLDYGS AYQGAAMFMP  840
SSAQASSSGN VWVGGQKDGG LAARSNPWKK AEPDLPTGDW TGVAGHAPAS GWRGANTATQ  900
VMGTQNRWNV LESDAATSSG PSEDRKTART DAGYSAAPNS GNTGPSVSKL QPDIEVDDWE  960
EACE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.48080.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG191400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811140.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2T7E1980.0A0A2T7E198_9POAL; Uncharacterized protein
STRINGSi005790m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1