PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG186700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 308aa    MW: 34825.2 Da    PI: 6.7047
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG186700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.6e-12135177447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT+eE+ +++++   +G   Wk I+r++  ++t+ q+ s+ qky
  Pavir.4KG186700.1.p 135 WTKEEHRQFLKGLDAYGRS-WKNISRHFVPNKTPIQICSHAQKY 177
                          *****************55.*********9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.891127182IPR017930Myb domain
SMARTSM007172.0E-9131180IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-14132183IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-12134180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.7E-9135179IPR009057Homeodomain-like
CDDcd001672.45E-7135178No hitNo description
PfamPF002491.9E-8135177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDPRFNGEWS ASEIQIVKSH IVGHNTNFYA NNMKKKHTDI VDELQAIFPL KEKHQVTNLY  60
VELMIEMMQS GNQHVTCNNL MVDNFGMRLE DPSMGNMEVL SDPLAEEMEA MRKEVDVSQR  120
QPTHQKEKQH AMRFWTKEEH RQFLKGLDAY GRSWKNISRH FVPNKTPIQI CSHAQKYFRR  180
LQNPNKKQRY SINDVGLYDT ELGVQNNDSV WEGFTITGGA YNPNHYGSND QPAAMNLAQV  240
TPPLLHITAQ VSSCQTATLA NGPPQQMGSS SSPAAPSMEG SGSNMGRIGD QQDDIFANQL  300
IMNMHMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG186700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813224.10.0myb-like protein H
TrEMBLA0A3L6RXQ90.0A0A3L6RXQ9_PANMI; Myb-like protein H
STRINGPavir.J10627.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-17MYB family protein