PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG185400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 683aa    MW: 80417.5 Da    PI: 9.6832
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG185400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.17e-142723491
                 FAR1 34 vCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                         +C ++gk+e++ k+              ++++rrt+++ +t+C++ ++vk+  +g w+v +l+l+HnHel+p
  Pavir.4KG185400.1.p  2 KCHRYGKQEKKVKEyqteetllvegnneDKTKRRTNVQVKTDCRCVMVVKEI-NGIWKVVRLDLDHNHELSP 72
                         8**********999************9999999*******************.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-12272IPR004330FAR1 DNA binding domain
PfamPF105512.2E-37192285IPR018289MULE transposase domain
PROSITE profilePS5096610.101477515IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4490517IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKCHRYGKQE KKVKEYQTEE TLLVEGNNED KTKRRTNVQV KTDCRCVMVV KEINGIWKVV  60
RLDLDHNHEL SPKDGNQLFS GKKYMTDMEK GVIRTLNDNN IPTRKMIAIL SYLRGGLTAL  120
PYKTKDVQNV RTKINREVTG NDMTQALEYF RKRKTEDPTF FYRFQVDNEM KVKNLYWREG  180
ISLQWYAEYG DCVSFDTTYM TNRYNLPFAP FVGITGHAHT CLFGCAFLSD ETTETFKWVF  240
ETFAESMGGK HPKSIITDQD KAMKSAIEKV FPNTRHRNCF FHIKSKCYNK NLRCFTANKG  300
LPEIFEDTVN FSVTEEEFEM LWQKMIFDFK LENNKYFSKM WDTRKRFIPV YFKNDFFPFI  360
QSTGRSEGTN ARFKDNVGPT YSIVSFLREY QRIVDSIRKK EEIEDSFSKQ KIPKELQYGY  420
TIEQQAIGLY NRNIYLKFMN QLKQTERYKY TETERGTCFE VWYKSNQIKK HERIRKYIVT  480
TNLKKGEEEF SCICGKFNKD GILCTHILKV IVEEEVMKIP EKYFIDRWRK KEMRLRNITI  540
EPTNSTHELL RFNMLSRKAA ILTSKAAKKE IATDYLKIEL DRIDKHLETL LAETGGTSCS  600
GTTEFEEQTQ IQRAGVPNDE GIVILADPTR IQQKGRPKNP TRLKPMVEQM REKMAKAEAK  660
KKMKKKPSNS SEICLQQIFH II*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG185400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R3310.0A0A1Z5R331_SORBI; Uncharacterized protein
STRINGPavir.J06646.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5