PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG172900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 399aa MW: 40381.4 Da PI: 9.1578

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG172900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.4	2.5e-42	59	234	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Pavir.4KG172900.1.p 59 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSIPah 148 789****************************************************************999888999999997777799 PP TCP 89 ..................................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137 +a +sa ++ s +s + l+++ +s + a + +r+ r++++m+ +++ + Pavir.4KG172900.1.p 149 lraaglpgprfggargdpwdrvvglgfggaegppSATSSASSPLLSFHSGSVGLDVSPSSTSAAASSdlSRKrRWEQEMQHQQQHQ 234 9999999************************75555555888889999988999995554444444677778888888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-43	63	234	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	65	119	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDVTGDAGGG RRPNFPLQLL EKKEEQACST SPAAGVGAGA AGNGRSAGPG ELQVRKAPPP 60 KRTSTKDRHT KVDGRGRRIR MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT 120 GTGTIPANFT SLNISLRSSG SSFSIPAHLR AAGLPGPRFG GARGDPWDRV VGLGFGGAEG 180 PPSATSSASS PLLSFHSGSV GLDVSPSSTS AAASSDLSRK RRWEQEMQHQ QQHQQQQQQY 240 QQQMAGYTQS QMPGTVWMVP SSNAQAAAAA AGGGGGGSES IWTFPQAARG GGGGAATLYR 300 GVPSGLHFMN FPAPMALLPG GQQLGLGQAA GGGDSGGGGG GEGHMGILAA LNAYRAQAAS 360 DAAAAAQNGA EGGSSSQHQQ SQHGGGERQE SMSPSDDS*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDVTGDAGGG RRPNFPLQLL EKKEEQACST SPAAGVGAGA AGNGRSAGPG ELQVRKAPPP  60
KRTSTKDRHT KVDGRGRRIR MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT  120
GTGTIPANFT SLNISLRSSG SSFSIPAHLR AAGLPGPRFG GARGDPWDRV VGLGFGGAEG  180
PPSATSSASS PLLSFHSGSV GLDVSPSSTS AAASSDLSRK RRWEQEMQHQ QQHQQQQQQY  240
QQQMAGYTQS QMPGTVWMVP SSNAQAAAAA AGGGGGGSES IWTFPQAARG GGGGAATLYR  300
GVPSGLHFMN FPAPMALLPG GQQLGLGQAA GGGDSGGGGG GEGHMGILAA LNAYRAQAAS  360
DAAAAAQNGA EGGSSSQHQQ SQHGGGERQE SMSPSDDS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG172900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810540.1	1e-170	transcription factor TCP15-like
TrEMBL	A0A270R654	1e-168	A0A270R654_9POAL; Uncharacterized protein
TrEMBL	A0A2T7E0T6	1e-168	A0A2T7E0T6_9POAL; Uncharacterized protein
STRING	Pavir.J21462.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	7e-46	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.4KG172900.1.p