PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG162800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 183aa MW: 19738 Da PI: 10.3637 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.2 | 6.4e-12 | 93 | 151 | 4 | 62 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r rr ++NRe+ArrsR RK+ ++ +L ++ L + N++L ++l++ +++++ + Pavir.4KG162800.1.p 93 ERRRRRTASNRESARRSRVRKQRQLGQLWAQAAHLRGDNRDLLDRLNRAIRDCDRVRRD 151 5899*******************************************998888877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.4E-9 | 90 | 154 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.0E-9 | 92 | 149 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.094 | 92 | 155 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.4E-7 | 92 | 148 | No hit | No description |
SuperFamily | SSF57959 | 6.47E-9 | 94 | 142 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 97 | 112 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.60E-13 | 101 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MYPGEVASVV LPYLPTAAAA AFGFGPHYHP PAGDHFLFPG ISTDLITLPY AAAAHAQQQH 60 PAGGQPFFLG GAPGPHPHDE SAAAGGGERL AEERRRRRTA SNRESARRSR VRKQRQLGQL 120 WAQAAHLRGD NRDLLDRLNR AIRDCDRVRR DNARLGAERA GLQRRLQELA AAGDDETAAT 180 AT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 98 | RRRRRT |
2 | 106 | 112 | RRSRVRK |
3 | 106 | 113 | RRSRVRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG162800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728263 | 6e-68 | KJ728263.1 Zea mays clone pUT6540 bZIP transcription factor (bZIP59) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813468.1 | 3e-83 | basic leucine zipper 8-like | ||||
TrEMBL | A0A2S3HJ48 | 7e-82 | A0A2S3HJ48_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DZ27 | 7e-82 | A0A2T7DZ27_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J40251.1.p | 4e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG162800.1.p |