PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG152700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 204aa MW: 21558.2 Da PI: 11.0281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.4 | 5e-31 | 22 | 167 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.kkvkaeekewyfFskrdkkya.......tgkrknr.atks 80 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd+p ++++a+e e yfF+ r g r at+s Pavir.4KG152700.2.p 22 LPPGFRFRPTDEELVVQYLRRKALGVPLPA-AVIPVVrDLYSLDPWDIPaAAADASEGEKYFFAVRPAGVGgsgcsgkLG-GGARaATAS 109 79****************************.8899999***********55666677799*****999877544433222.3444489** PP NAM 81 gyWkatgkdkevlsk.....kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 g+Wk +gk+k+v+ ++ lvg+k+ ++f k+ ++ + + Wvmheyrl Pavir.4KG152700.2.p 110 GRWKPSGKEKPVVLPrpcggGSLLVGVKRAMTFAprrnkKKASSAALAAGWVMHEYRL 167 *************99899877777**********7654222333344789******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-37 | 17 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.511 | 22 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-20 | 23 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MESAPVLVRH AGGVAVAALR QLPPGFRFRP TDEELVVQYL RRKALGVPLP AAVIPVVRDL 60 YSLDPWDIPA AAADASEGEK YFFAVRPAGV GGSGCSGKLG GGARAATASG RWKPSGKEKP 120 VVLPRPCGGG SLLVGVKRAM TFAPRRNKKK ASSAALAAGW VMHEYRLAAP LHKNVSNSSC 180 SLFVHIPNHA LFFSLLRHHV LLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-22 | 10 | 177 | 3 | 152 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-22 | 10 | 177 | 3 | 152 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-22 | 10 | 177 | 3 | 152 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-22 | 10 | 177 | 3 | 152 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-22 | 10 | 177 | 3 | 152 | NAC domain-containing protein 19 |
4dul_B | 2e-22 | 10 | 177 | 3 | 152 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3961 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG152700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820406.1 | 6e-93 | NAC domain-containing protein 18-like isoform X1 | ||||
TrEMBL | A0A3L6RHL2 | 4e-92 | A0A3L6RHL2_PANMI; NAC domain-containing protein 18-like | ||||
STRING | Pavir.J04931.1.p | 1e-129 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 5e-26 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG152700.2.p |