PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG152700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 21629.3 Da PI: 11.0281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99 | 6.8e-31 | 22 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkya.......tgkrknr.atk 79 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd+p+ +++a+e e yfF+ r g r at+ Pavir.4KG152700.1.p 22 LPPGFRFRPTDEELVVQYLRRKALGVPLPA-AVIPVVrDLYSLDPWDIPAaaAADASEGEKYFFAVRPAGVGgsgcsgkLG-GGARaATA 109 79****************************.8899999***********522444455599*****999877544433222.3444489* PP NAM 80 sgyWkatgkdkevlsk.....kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 sg+Wk +gk+k+v+ ++ lvg+k+ ++f k+ ++ + + Wvmheyrl Pavir.4KG152700.1.p 110 SGRWKPSGKEKPVVLPrpcggGSLLVGVKRAMTFAprrnkKKASSAALAAGWVMHEYRL 168 **************99899877777**********7654222333344789******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-36 | 17 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.403 | 22 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-20 | 23 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MESAPVLVRH AGGVAVAALR QLPPGFRFRP TDEELVVQYL RRKALGVPLP AAVIPVVRDL 60 YSLDPWDIPA AAAADASEGE KYFFAVRPAG VGGSGCSGKL GGGARAATAS GRWKPSGKEK 120 PVVLPRPCGG GSLLVGVKRA MTFAPRRNKK KASSAALAAG WVMHEYRLAA PLHKNVSNSS 180 CSLFVHIPNH ALFFSLLRHH VLLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-22 | 21 | 168 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3961 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG152700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820406.1 | 7e-93 | NAC domain-containing protein 18-like isoform X1 | ||||
TrEMBL | A0A3L6RHL2 | 5e-92 | A0A3L6RHL2_PANMI; NAC domain-containing protein 18-like | ||||
STRING | Pavir.J04931.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 7e-26 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG152700.1.p |