PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG151800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 346aa    MW: 37207.7 Da    PI: 6.4214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG151800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-052382751254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Pavir.4KG151800.1.p 238 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 275
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.036226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-12236296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-6236280No hitNo description
SMARTSM003530.0055237281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-9240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MADEWWSSAR TGDDGGASAC STVRATDQDA AEPPATSATE TDYFRPSLLH VGAAAAAASP  60
PPSFLADPAP HMVDWTQAYM GGSGRAAGAE ATNSFNALLQ LHGDDAGRHF LLDQQPDVVD  120
GVAPVEPAAA ASRSAPLYVD KQYSSYGDVP ATPMMTKPFS QQQQQHISGF FGSSMRTFSD  180
MPSAPPMTRT KPLLLQALEH KAFESNDEPV QDTCSLATTR SKKPRIATPS PLPTFKVRKE  240
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIRFLHNQVA SLSSPYLRCG RPVQQLQQQQ  300
IKEGREAKDL RSRGLCLVPV ASTYAVAASE TAPEFWHPTF GGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG151800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695461e-79BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806482.10.0transcription factor bHLH112-like isoform X2
TrEMBLA0A2S3HAQ50.0A0A2S3HAQ5_9POAL; Uncharacterized protein
STRINGPavir.J10443.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-45bHLH family protein